Hi Mathis, To be honest I am only following the steps on https://dumux.org/docs/doxygen/master/installation.html
I am not completely sure about the release version I am grateful for your help! Regards, Fabian ________________________________ From: Mathis Kelm <[email protected]> Sent: Friday, June 7, 2024 11:40:21 AM To: Tapias Hernandez, Fabian Andres Subject: Re: [DuMux] Help_Install Dumux Dear Fabian, please share the "installdumux.log" so we can see what went wrong. Are you installing the latest release 3.8 or some other version of DuMux? Kind regards, Mathis ________________________________ From: "Tapias Hernandez, Fabian Andres" <[email protected]><mailto:[email protected]> To: [email protected]<mailto:[email protected]> <[email protected]><mailto:[email protected]> Reply-To: DuMux User Mailing List <[email protected]><mailto:[email protected]> Date: Fri, 7 Jun, 2024 10:35:16 +0200 Subject: [DuMux] Help_Install Dumux Dear all, It is a pleasure to write to you. I am Fabian Tapias, a doctoral researcher from the Applied Mechanics Institute at U.Stuttgart. I am trying to install Dumux on my laptop (Ubuntu 20.04), and appeared the error "The command ./dune-common/bin/dunecontrol --opts=dumux/cmake.opts all returned with non-zero exit code." Could you please guide me on how to fix it? Thank you! Fabian _______________________________________________ DuMux mailing list [email protected]<mailto:[email protected]> https://listserv.uni-stuttgart.de/mailman/listinfo/dumux -- ******************************************************** Mathis Kelm Universitaet Stuttgart Institut fuer Wasser- und Umweltsystemmodellierung Lehrstuhl fuer Hydromechanik und Hydrosystemmodellierung Pfaffenwaldring 61, 70569 Stuttgart Tel.: 0711/685-60146 [email protected]<mailto:[email protected]> https://www.iws.uni-stuttgart.de/lh2/ ********************************************************
************************************************************************************************************************ (1/3) Checking all prerequisites: git gcc g++ cmake pkg-config... ************************************************************************************************************************ ParaView could not be found. (You might have it but we can't find it.) We recommend installing ParaView to view simulation results. ************************************************************************************************************************ (1/3) Step completed. All prerequisites found. ************************************************************************************************************************ ************************************************************************************************************************ (2/3) Cloning repositories. This may take a while. Make sure to be connected to the internet... ************************************************************************************************************************ Skip cloning dune-common because the folder already exists. Running git checkout releases/2.9 Already on 'releases/2.9' Your branch is up to date with 'origin/releases/2.9'. Skip cloning dune-geometry because the folder already exists. Running git checkout releases/2.9 Already on 'releases/2.9' Your branch is up to date with 'origin/releases/2.9'. Skip cloning dune-grid because the folder already exists. Running git checkout releases/2.9 Already on 'releases/2.9' Your branch is up to date with 'origin/releases/2.9'. Skip cloning dune-localfunctions because the folder already exists. Running git checkout releases/2.9 Already on 'releases/2.9' Your branch is up to date with 'origin/releases/2.9'. Skip cloning dune-istl because the folder already exists. Running git checkout releases/2.9 Already on 'releases/2.9' Your branch is up to date with 'origin/releases/2.9'. Skip cloning dumux because the folder already exists. Running git checkout releases/3.8 Already on 'releases/3.8' Your branch is up to date with 'origin/releases/3.8'. ************************************************************************************************************************ (2/3) Step completed. All repositories have been cloned into a containing folder. ************************************************************************************************************************ ************************************************************************************************************************ (3/3) Configure and build dune modules and dumux using dunecontrol. This may take several minutes... ************************************************************************************************************************ Running ./dune-common/bin/dunecontrol --opts=dumux/cmake.opts all ----- using default flags $CMAKE_FLAGS from /home/fabian/dumux/dumux/cmake.opts ----- --- going to build dune-common dune-geometry dune-grid dune-localfunctions dune-istl dumux --- --- calling all for dune-common --- --- calling vcsetup for dune-common --- --- calling cmake for dune-common --- ----- using default flags $CMAKE_FLAGS from /home/fabian/dumux/dumux/cmake.opts ----- cmake -DCMAKE_CXX_FLAGS_RELEASE=' -fdiagnostics-color=always -fno-strict-aliasing -fstrict-overflow -fno-finite-math-only -DNDEBUG=1 -O3 -march=native -funroll-loops -g0 -Wall -Wunused -Wmissing-include-dirs -Wcast-align -Wno-missing-braces -Wmissing-field-initializers -Wno-sign-compare' -DCMAKE_CXX_FLAGS_DEBUG='-O0 -g -ggdb -Wall -Wextra -Wno-unused-parameter -Wno-sign-compare' -DCMAKE_CXX_FLAGS_RELWITHDEBINFO=' -fdiagnostics-color=always -fno-strict-aliasing -fstrict-overflow -fno-finite-math-only -DNDEBUG=1 -O3 -march=native -funroll-loops -g0 -Wall -Wunused -Wmissing-include-dirs -Wcast-align -Wno-missing-braces -Wmissing-field-initializers -Wno-sign-compare -g -ggdb -Wall' -DCMAKE_BUILD_TYPE=Release -DENABLE_HEADERCHECK=OFF -DDUNE_ENABLE_PYTHONBINDINGS=ON -DBUILD_SHARED_LIBS=ON -DCMAKE_POSITION_INDEPENDENT_CODE=ON -DCMAKE_CXX_FLAGS_RELEASE=' -fdiagnostics-color=always -fno-strict-aliasing -fstrict-overflow -fno-finite-math-only -DNDEBUG=1 -O3 -march=native -funroll-loops -g0 -Wall -Wunused -Wmissing-include-dirs -Wcast-align -Wno-missing-braces -Wmissing-field-initializers -Wno-sign-compare' -DCMAKE_CXX_FLAGS_DEBUG='-O0 -g -ggdb -Wall -Wextra -Wno-unused-parameter -Wno-sign-compare' -DCMAKE_CXX_FLAGS_RELWITHDEBINFO=' -fdiagnostics-color=always -fno-strict-aliasing -fstrict-overflow -fno-finite-math-only -DNDEBUG=1 -O3 -march=native -funroll-loops -g0 -Wall -Wunused -Wmissing-include-dirs -Wcast-align -Wno-missing-braces -Wmissing-field-initializers -Wno-sign-compare -g -ggdb -Wall' -DCMAKE_BUILD_TYPE=Release -DENABLE_HEADERCHECK=OFF -DDUNE_ENABLE_PYTHONBINDINGS=ON -DBUILD_SHARED_LIBS=ON -DCMAKE_POSITION_INDEPENDENT_CODE=ON -DDUNE_OPTS_FILE=/home/fabian/dumux/dumux/cmake.opts "/home/fabian/dumux/dune-common" -- Could NOT find LATEX (missing: LATEX_COMPILER) -- Could NOT find LatexMk (missing: LATEXMK_EXECUTABLE) -- Performing tests for dune-common (from /home/fabian/dumux/dune-common/cmake/modules/DuneCommonMacros.cmake) -- Set Minimal Debug Level to 4 -- A library with LAPACK API found. -- Could NOT find GMP (missing: GMPXX_LIB GMPXX_INCLUDE_DIR GMP_INCLUDE_DIR GMP_LIB) -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found suitable version "3.1", minimum required is "3.0") -- Found MPI: TRUE (found suitable version "3.1", minimum required is "3.0") found components: C -- Could NOT find TBB (set TBB_DIR to path containing TBBConfig.cmake or set PKG_CONFIG_PATH to include the location of the tbb.pc file) (missing: PkgConfigTBB_LINK_LIBRARIES PkgConfigTBB_FOUND) (found version "") -- Could NOT find PTScotch (missing: SCOTCH_LIBRARY SCOTCHERR_LIBRARY SCOTCH_INCLUDE_DIR) -- Could NOT find METIS (missing: METIS_LIBRARY METIS_INCLUDE_DIR METIS_API_VERSION) -- Could NOT find METIS (missing: METIS_LIBRARY METIS_INCLUDE_DIR METIS_API_VERSION) -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") found components: C -- Could NOT find ParMETIS (missing: PARMETIS_LIBRARY PARMETIS_INCLUDE_DIR METIS_FOUND) (Required is at least version "4.0") -- Detected Compiler: GCC 9 CMake Warning at /usr/local/lib/cmake/Vc/OptimizeForArchitecture.cmake:173 (message): Your CPU (family 6, model 154) is not known. Auto-detection of optimization flags failed and will use the 65nm Core 2 CPU settings. Call Stack (most recent call first): /usr/local/lib/cmake/Vc/OptimizeForArchitecture.cmake:247 (AutodetectHostArchitecture) /usr/local/lib/cmake/Vc/OptimizeForArchitecture.cmake:217 (OptimizeForArchitectureX86) /usr/local/lib/cmake/Vc/VcMacros.cmake:363 (OptimizeForArchitecture) /usr/local/lib/cmake/Vc/VcConfig.cmake:41 (vc_set_preferred_compiler_flags) cmake/modules/DuneCommonMacros.cmake:50 (find_package) cmake/modules/DuneModuleDependencies.cmake:112 (include) cmake/modules/DuneProject.cmake:123 (dune_process_dependency_macros) CMakeLists.txt:19 (dune_project) -- Detected CPU: merom -- Could NOT find Python3 (missing: Python3_INCLUDE_DIRS Development Development.Module Development.Embed) (found version "3.8.10") -- Failed to find the python package pip with interpreter /usr/bin/python3. (missing: DUNE_PYTHON_pip_FOUND) CMake Warning at cmake/modules/DunePythonCommonMacros.cmake:108 (message): Found a Python interpreter but the Python bindings also requires the Python libraries (a package named like python-dev package or python3-devel) Call Stack (most recent call first): cmake/modules/DuneCommonMacros.cmake:54 (include) cmake/modules/DuneModuleDependencies.cmake:112 (include) cmake/modules/DuneProject.cmake:123 (dune_process_dependency_macros) CMakeLists.txt:19 (dune_project) -- Using scripts from /home/fabian/dumux/dune-common/cmake/scripts for creating doxygen stuff. -- using /home/fabian/dumux/dune-common/doc/doxygen/Doxystyle to create doxystyle file -- using C macro definitions from /home/fabian/dumux/dune-common/doc/doxygen/doxygen-macros for Doxygen -- Not adding custom target for config.h generation -- The following OPTIONAL packages have been found: * Sphinx, Documentation generator, <www.sphinx-doc.org> To generate the documentation from CMake and Python sources * Doxygen, Class documentation generator, <www.doxygen.org> To generate the class documentation from C++ sources * BLAS, fast linear algebra routines * LAPACK, fast linear algebra routines * QuadMath, GCC Quad-Precision Math Library, <https://gcc.gnu.org/onlinedocs/libquadmath> * Inkscape, converts SVG images, <www.inkscape.org> To generate the documentation with LaTeX * Threads, Multi-threading library * PkgConfig, Unified interface for querying installed libraries To find Dune module dependencies * MPI, Message Passing Interface library Parallel programming on multiple processors * Vc, C++ Vectorization library, <https://github.com/VcDevel/Vc> For use of SIMD instructions -- The following OPTIONAL packages have not been found: * LATEX * LatexMk * GMP, GNU multi-precision library, <https://gmplib.org> * TBB, Intel's Threading Building Blocks, <https://github.com/oneapi-src/oneTBB> * PTScotch, Sequential and Parallel Graph Partitioning, <https://gitlab.inria.fr/scotch/scotch> * METIS, Serial Graph Partitioning, <http://glaros.dtc.umn.edu/gkhome/metis/metis/overview> * ParMETIS (required version >= 4.0), Parallel Graph Partitioning, <http://glaros.dtc.umn.edu/gkhome/metis/parmetis/overview> * Python3 -- Configuring done -- Generating done -- Build files have been written to: /home/fabian/dumux/dune-common/build-cmake --- calling make for dune-common --- build directory: build-cmake cmake --build . -- [100%] Built target dunecommon --- dune-common done --- --- calling all for dune-geometry --- --- calling vcsetup for dune-geometry --- --- calling cmake for dune-geometry --- ----- using default flags $CMAKE_FLAGS from /home/fabian/dumux/dumux/cmake.opts ----- cmake -DCMAKE_CXX_FLAGS_RELEASE=' -fdiagnostics-color=always -fno-strict-aliasing -fstrict-overflow -fno-finite-math-only -DNDEBUG=1 -O3 -march=native -funroll-loops -g0 -Wall -Wunused -Wmissing-include-dirs -Wcast-align -Wno-missing-braces -Wmissing-field-initializers -Wno-sign-compare' -DCMAKE_CXX_FLAGS_DEBUG='-O0 -g -ggdb -Wall -Wextra -Wno-unused-parameter -Wno-sign-compare' -DCMAKE_CXX_FLAGS_RELWITHDEBINFO=' -fdiagnostics-color=always -fno-strict-aliasing -fstrict-overflow -fno-finite-math-only -DNDEBUG=1 -O3 -march=native -funroll-loops -g0 -Wall -Wunused -Wmissing-include-dirs -Wcast-align -Wno-missing-braces -Wmissing-field-initializers -Wno-sign-compare -g -ggdb -Wall' -DCMAKE_BUILD_TYPE=Release -DENABLE_HEADERCHECK=OFF -DDUNE_ENABLE_PYTHONBINDINGS=ON -DBUILD_SHARED_LIBS=ON -DCMAKE_POSITION_INDEPENDENT_CODE=ON "-Ddune-common_DIR=/home/fabian/dumux/dune-common/build-cmake" -DCMAKE_CXX_FLAGS_RELEASE=' -fdiagnostics-color=always -fno-strict-aliasing -fstrict-overflow -fno-finite-math-only -DNDEBUG=1 -O3 -march=native -funroll-loops -g0 -Wall -Wunused -Wmissing-include-dirs -Wcast-align -Wno-missing-braces -Wmissing-field-initializers -Wno-sign-compare' -DCMAKE_CXX_FLAGS_DEBUG='-O0 -g -ggdb -Wall -Wextra -Wno-unused-parameter -Wno-sign-compare' -DCMAKE_CXX_FLAGS_RELWITHDEBINFO=' -fdiagnostics-color=always -fno-strict-aliasing -fstrict-overflow -fno-finite-math-only -DNDEBUG=1 -O3 -march=native -funroll-loops -g0 -Wall -Wunused -Wmissing-include-dirs -Wcast-align -Wno-missing-braces -Wmissing-field-initializers -Wno-sign-compare -g -ggdb -Wall' -DCMAKE_BUILD_TYPE=Release -DENABLE_HEADERCHECK=OFF -DDUNE_ENABLE_PYTHONBINDINGS=ON -DBUILD_SHARED_LIBS=ON -DCMAKE_POSITION_INDEPENDENT_CODE=ON -DDUNE_OPTS_FILE=/home/fabian/dumux/dumux/cmake.opts "/home/fabian/dumux/dune-geometry" -- Dependencies for dune-geometry: dune-common (>= 2.9) -- Could NOT find LATEX (missing: LATEX_COMPILER) -- Could NOT find LatexMk (missing: LATEXMK_EXECUTABLE) -- Performing tests for dune-common (from /home/fabian/dumux/dune-common/cmake/modules/DuneCommonMacros.cmake) -- Set Minimal Debug Level to 4 -- A library with LAPACK API found. -- Could NOT find GMP (missing: GMPXX_LIB GMPXX_INCLUDE_DIR GMP_INCLUDE_DIR GMP_LIB) -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found suitable version "3.1", minimum required is "3.0") -- Found MPI: TRUE (found suitable version "3.1", minimum required is "3.0") found components: C -- Could NOT find TBB (set TBB_DIR to path containing TBBConfig.cmake or set PKG_CONFIG_PATH to include the location of the tbb.pc file) (missing: PkgConfigTBB_LINK_LIBRARIES PkgConfigTBB_FOUND) (found version "") -- Could NOT find PTScotch (missing: SCOTCH_LIBRARY SCOTCHERR_LIBRARY SCOTCH_INCLUDE_DIR) -- Could NOT find METIS (missing: METIS_LIBRARY METIS_INCLUDE_DIR METIS_API_VERSION) -- Could NOT find METIS (missing: METIS_LIBRARY METIS_INCLUDE_DIR METIS_API_VERSION) -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") found components: C -- Could NOT find ParMETIS (missing: PARMETIS_LIBRARY PARMETIS_INCLUDE_DIR METIS_FOUND) (Required is at least version "4.0") -- Detected Compiler: GCC 9 CMake Warning at /usr/local/lib/cmake/Vc/OptimizeForArchitecture.cmake:173 (message): Your CPU (family 6, model 154) is not known. Auto-detection of optimization flags failed and will use the 65nm Core 2 CPU settings. Call Stack (most recent call first): /usr/local/lib/cmake/Vc/OptimizeForArchitecture.cmake:247 (AutodetectHostArchitecture) /usr/local/lib/cmake/Vc/OptimizeForArchitecture.cmake:217 (OptimizeForArchitectureX86) /usr/local/lib/cmake/Vc/VcMacros.cmake:363 (OptimizeForArchitecture) /usr/local/lib/cmake/Vc/VcConfig.cmake:41 (vc_set_preferred_compiler_flags) /home/fabian/dumux/dune-common/cmake/modules/DuneCommonMacros.cmake:50 (find_package) /home/fabian/dumux/dune-common/cmake/modules/DuneModuleDependencies.cmake:112 (include) /home/fabian/dumux/dune-common/cmake/modules/DuneProject.cmake:123 (dune_process_dependency_macros) CMakeLists.txt:21 (dune_project) -- Detected CPU: merom -- Could NOT find Python3 (missing: Python3_INCLUDE_DIRS Development Development.Module Development.Embed) (found version "3.8.10") -- Failed to find the python package pip with interpreter /usr/bin/python3. (missing: DUNE_PYTHON_pip_FOUND) CMake Warning at /home/fabian/dumux/dune-common/cmake/modules/DunePythonCommonMacros.cmake:108 (message): Found a Python interpreter but the Python bindings also requires the Python libraries (a package named like python-dev package or python3-devel) Call Stack (most recent call first): /home/fabian/dumux/dune-common/cmake/modules/DuneCommonMacros.cmake:54 (include) /home/fabian/dumux/dune-common/cmake/modules/DuneModuleDependencies.cmake:112 (include) /home/fabian/dumux/dune-common/cmake/modules/DuneProject.cmake:123 (dune_process_dependency_macros) CMakeLists.txt:21 (dune_project) -- Setting dune-common_INCLUDE_DIRS=/home/fabian/dumux/dune-common -- Setting dune-common_LIBRARIES=dunecommon -- Using scripts from /home/fabian/dumux/dune-common/cmake/scripts for creating doxygen stuff. -- using /home/fabian/dumux/dune-common/doc/doxygen/Doxystyle to create doxystyle file -- using C macro definitions from /home/fabian/dumux/dune-common/doc/doxygen/doxygen-macros for Doxygen -- Adding custom target for config.h generation -- The following OPTIONAL packages have been found: * Sphinx, Documentation generator, <www.sphinx-doc.org> To generate the documentation from CMake and Python sources * Doxygen, Class documentation generator, <www.doxygen.org> To generate the class documentation from C++ sources * BLAS, fast linear algebra routines * LAPACK, fast linear algebra routines * QuadMath, GCC Quad-Precision Math Library, <https://gcc.gnu.org/onlinedocs/libquadmath> * Inkscape, converts SVG images, <www.inkscape.org> To generate the documentation with LaTeX * Threads, Multi-threading library * PkgConfig, Unified interface for querying installed libraries To find Dune module dependencies * MPI, Message Passing Interface library Parallel programming on multiple processors * Vc, C++ Vectorization library, <https://github.com/VcDevel/Vc> For use of SIMD instructions -- The following REQUIRED packages have been found: * dune-common -- The following OPTIONAL packages have not been found: * LATEX * LatexMk * GMP, GNU multi-precision library, <https://gmplib.org> * TBB, Intel's Threading Building Blocks, <https://github.com/oneapi-src/oneTBB> * PTScotch, Sequential and Parallel Graph Partitioning, <https://gitlab.inria.fr/scotch/scotch> * METIS, Serial Graph Partitioning, <http://glaros.dtc.umn.edu/gkhome/metis/metis/overview> * ParMETIS (required version >= 4.0), Parallel Graph Partitioning, <http://glaros.dtc.umn.edu/gkhome/metis/parmetis/overview> * Python3 -- Configuring done -- Generating done -- Build files have been written to: /home/fabian/dumux/dune-geometry/build-cmake --- calling make for dune-geometry --- build directory: build-cmake cmake --build . -- [100%] Built target dunegeometry --- dune-geometry done --- --- calling all for dune-grid --- --- calling vcsetup for dune-grid --- --- calling cmake for dune-grid --- ----- using default flags $CMAKE_FLAGS from /home/fabian/dumux/dumux/cmake.opts ----- cmake -DCMAKE_CXX_FLAGS_RELEASE=' -fdiagnostics-color=always -fno-strict-aliasing -fstrict-overflow -fno-finite-math-only -DNDEBUG=1 -O3 -march=native -funroll-loops -g0 -Wall -Wunused -Wmissing-include-dirs -Wcast-align -Wno-missing-braces -Wmissing-field-initializers -Wno-sign-compare' -DCMAKE_CXX_FLAGS_DEBUG='-O0 -g -ggdb -Wall -Wextra -Wno-unused-parameter -Wno-sign-compare' -DCMAKE_CXX_FLAGS_RELWITHDEBINFO=' -fdiagnostics-color=always -fno-strict-aliasing -fstrict-overflow -fno-finite-math-only -DNDEBUG=1 -O3 -march=native -funroll-loops -g0 -Wall -Wunused -Wmissing-include-dirs -Wcast-align -Wno-missing-braces -Wmissing-field-initializers -Wno-sign-compare -g -ggdb -Wall' -DCMAKE_BUILD_TYPE=Release -DENABLE_HEADERCHECK=OFF -DDUNE_ENABLE_PYTHONBINDINGS=ON -DBUILD_SHARED_LIBS=ON -DCMAKE_POSITION_INDEPENDENT_CODE=ON "-Ddune-common_DIR=/home/fabian/dumux/dune-common/build-cmake" "-Ddune-geometry_DIR=/home/fabian/dumux/dune-geometry/build-cmake" -DCMAKE_CXX_FLAGS_RELEASE=' -fdiagnostics-color=always -fno-strict-aliasing -fstrict-overflow -fno-finite-math-only -DNDEBUG=1 -O3 -march=native -funroll-loops -g0 -Wall -Wunused -Wmissing-include-dirs -Wcast-align -Wno-missing-braces -Wmissing-field-initializers -Wno-sign-compare' -DCMAKE_CXX_FLAGS_DEBUG='-O0 -g -ggdb -Wall -Wextra -Wno-unused-parameter -Wno-sign-compare' -DCMAKE_CXX_FLAGS_RELWITHDEBINFO=' -fdiagnostics-color=always -fno-strict-aliasing -fstrict-overflow -fno-finite-math-only -DNDEBUG=1 -O3 -march=native -funroll-loops -g0 -Wall -Wunused -Wmissing-include-dirs -Wcast-align -Wno-missing-braces -Wmissing-field-initializers -Wno-sign-compare -g -ggdb -Wall' -DCMAKE_BUILD_TYPE=Release -DENABLE_HEADERCHECK=OFF -DDUNE_ENABLE_PYTHONBINDINGS=ON -DBUILD_SHARED_LIBS=ON -DCMAKE_POSITION_INDEPENDENT_CODE=ON -DDUNE_OPTS_FILE=/home/fabian/dumux/dumux/cmake.opts "/home/fabian/dumux/dune-grid" -- Dependencies for dune-grid: dune-geometry (>= 2.9) -- Suggestions for dune-grid: dune-uggrid (>=2.9) -- Dependencies for dune-geometry: dune-common (>= 2.9) -- Could NOT find dune-uggrid (missing: dune-uggrid_DIR) -- No full CMake package configuration support available. Falling back to pkg-config. -- Checking for module 'dune-uggrid>=2.9' -- No package 'dune-uggrid' found -- Could NOT find LATEX (missing: LATEX_COMPILER) -- Could NOT find LatexMk (missing: LATEXMK_EXECUTABLE) -- Performing tests for dune-common (from /home/fabian/dumux/dune-common/cmake/modules/DuneCommonMacros.cmake) -- Set Minimal Debug Level to 4 -- A library with LAPACK API found. -- Could NOT find GMP (missing: GMPXX_LIB GMPXX_INCLUDE_DIR GMP_INCLUDE_DIR GMP_LIB) -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found suitable version "3.1", minimum required is "3.0") -- Found MPI: TRUE (found suitable version "3.1", minimum required is "3.0") found components: C -- Could NOT find TBB (set TBB_DIR to path containing TBBConfig.cmake or set PKG_CONFIG_PATH to include the location of the tbb.pc file) (missing: PkgConfigTBB_LINK_LIBRARIES PkgConfigTBB_FOUND) (found version "") -- Could NOT find PTScotch (missing: SCOTCH_LIBRARY SCOTCHERR_LIBRARY SCOTCH_INCLUDE_DIR) -- Could NOT find METIS (missing: METIS_LIBRARY METIS_INCLUDE_DIR METIS_API_VERSION) -- Could NOT find METIS (missing: METIS_LIBRARY METIS_INCLUDE_DIR METIS_API_VERSION) -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") found components: C -- Could NOT find ParMETIS (missing: PARMETIS_LIBRARY PARMETIS_INCLUDE_DIR METIS_FOUND) (Required is at least version "4.0") -- Detected Compiler: GCC 9 CMake Warning at /usr/local/lib/cmake/Vc/OptimizeForArchitecture.cmake:173 (message): Your CPU (family 6, model 154) is not known. Auto-detection of optimization flags failed and will use the 65nm Core 2 CPU settings. Call Stack (most recent call first): /usr/local/lib/cmake/Vc/OptimizeForArchitecture.cmake:247 (AutodetectHostArchitecture) /usr/local/lib/cmake/Vc/OptimizeForArchitecture.cmake:217 (OptimizeForArchitectureX86) /usr/local/lib/cmake/Vc/VcMacros.cmake:363 (OptimizeForArchitecture) /usr/local/lib/cmake/Vc/VcConfig.cmake:41 (vc_set_preferred_compiler_flags) /home/fabian/dumux/dune-common/cmake/modules/DuneCommonMacros.cmake:50 (find_package) /home/fabian/dumux/dune-common/cmake/modules/DuneModuleDependencies.cmake:112 (include) /home/fabian/dumux/dune-common/cmake/modules/DuneProject.cmake:123 (dune_process_dependency_macros) CMakeLists.txt:22 (dune_project) -- Detected CPU: merom -- Could NOT find Python3 (missing: Python3_INCLUDE_DIRS Development Development.Module Development.Embed) (found version "3.8.10") -- Failed to find the python package pip with interpreter /usr/bin/python3. (missing: DUNE_PYTHON_pip_FOUND) CMake Warning at /home/fabian/dumux/dune-common/cmake/modules/DunePythonCommonMacros.cmake:108 (message): Found a Python interpreter but the Python bindings also requires the Python libraries (a package named like python-dev package or python3-devel) Call Stack (most recent call first): /home/fabian/dumux/dune-common/cmake/modules/DuneCommonMacros.cmake:54 (include) /home/fabian/dumux/dune-common/cmake/modules/DuneModuleDependencies.cmake:112 (include) /home/fabian/dumux/dune-common/cmake/modules/DuneProject.cmake:123 (dune_process_dependency_macros) CMakeLists.txt:22 (dune_project) -- Setting dune-common_INCLUDE_DIRS=/home/fabian/dumux/dune-common -- Setting dune-common_LIBRARIES=dunecommon -- Setting dune-geometry_INCLUDE_DIRS=/home/fabian/dumux/dune-geometry -- Setting dune-geometry_LIBRARIES=dunegeometry -- Performing tests for dune-grid (from /home/fabian/dumux/dune-grid/cmake/modules/DuneGridMacros.cmake) -- Could NOT find METIS (missing: METIS_LIBRARY METIS_INCLUDE_DIR METIS_API_VERSION) -- Could NOT find METIS (missing: METIS_LIBRARY METIS_INCLUDE_DIR METIS_API_VERSION) -- Could NOT find ParMETIS (missing: PARMETIS_LIBRARY PARMETIS_INCLUDE_DIR METIS_FOUND) -- Checking for module 'alberta-grid_1d>=3.0' -- No package 'alberta-grid_1d' found -- Checking for module 'alberta-grid_2d>=3.0' -- No package 'alberta-grid_2d' found -- Checking for module 'alberta-grid_3d>=3.0' -- No package 'alberta-grid_3d' found -- Could NOT find Alberta (set PKG_CONFIG_PATH to include the location of the alberta-grid_[n]d.pc files) (missing: ALBERTA_GRID_PREFIX) (Required is at least version "3.0") -- Using scripts from /home/fabian/dumux/dune-common/cmake/scripts for creating doxygen stuff. -- using /home/fabian/dumux/dune-common/doc/doxygen/Doxystyle to create doxystyle file -- using C macro definitions from /home/fabian/dumux/dune-common/doc/doxygen/doxygen-macros for Doxygen -- Adding custom target for config.h generation -- The following OPTIONAL packages have been found: * Sphinx, Documentation generator, <www.sphinx-doc.org> To generate the documentation from CMake and Python sources * Doxygen, Class documentation generator, <www.doxygen.org> To generate the class documentation from C++ sources * BLAS, fast linear algebra routines * LAPACK, fast linear algebra routines * QuadMath, GCC Quad-Precision Math Library, <https://gcc.gnu.org/onlinedocs/libquadmath> * Inkscape, converts SVG images, <www.inkscape.org> To generate the documentation with LaTeX * Threads, Multi-threading library * Vc, C++ Vectorization library, <https://github.com/VcDevel/Vc> For use of SIMD instructions * MPI, Message Passing Interface library Parallel programming on multiple processors * PkgConfig, Unified interface for querying installed libraries To find Dune module dependencies -- The following REQUIRED packages have been found: * dune-common * dune-geometry -- The following OPTIONAL packages have not been found: * dune-uggrid * LATEX * LatexMk * GMP, GNU multi-precision library, <https://gmplib.org> * TBB, Intel's Threading Building Blocks, <https://github.com/oneapi-src/oneTBB> * PTScotch, Sequential and Parallel Graph Partitioning, <https://gitlab.inria.fr/scotch/scotch> * Python3 * METIS, Serial Graph Partitioning, <http://glaros.dtc.umn.edu/gkhome/metis/metis/overview> * ParMETIS, Parallel Graph Partitioning, <http://glaros.dtc.umn.edu/gkhome/metis/parmetis/overview> * Alberta (required version >= 3.0), An adaptive hierarchical finite element toolbox and grid manager, <https://gitlab.com/alberta-fem/alberta3> Provides the grid manager AlbertaGrid and file reader AlbertaReader -- Configuring done -- Generating done -- Build files have been written to: /home/fabian/dumux/dune-grid/build-cmake --- calling make for dune-grid --- build directory: build-cmake cmake --build . -- [100%] Built target dunegrid --- dune-grid done --- --- calling all for dune-localfunctions --- --- calling vcsetup for dune-localfunctions --- --- calling cmake for dune-localfunctions --- ----- using default flags $CMAKE_FLAGS from /home/fabian/dumux/dumux/cmake.opts ----- cmake -DCMAKE_CXX_FLAGS_RELEASE=' -fdiagnostics-color=always -fno-strict-aliasing -fstrict-overflow -fno-finite-math-only -DNDEBUG=1 -O3 -march=native -funroll-loops -g0 -Wall -Wunused -Wmissing-include-dirs -Wcast-align -Wno-missing-braces -Wmissing-field-initializers -Wno-sign-compare' -DCMAKE_CXX_FLAGS_DEBUG='-O0 -g -ggdb -Wall -Wextra -Wno-unused-parameter -Wno-sign-compare' -DCMAKE_CXX_FLAGS_RELWITHDEBINFO=' -fdiagnostics-color=always -fno-strict-aliasing -fstrict-overflow -fno-finite-math-only -DNDEBUG=1 -O3 -march=native -funroll-loops -g0 -Wall -Wunused -Wmissing-include-dirs -Wcast-align -Wno-missing-braces -Wmissing-field-initializers -Wno-sign-compare -g -ggdb -Wall' -DCMAKE_BUILD_TYPE=Release -DENABLE_HEADERCHECK=OFF -DDUNE_ENABLE_PYTHONBINDINGS=ON -DBUILD_SHARED_LIBS=ON -DCMAKE_POSITION_INDEPENDENT_CODE=ON "-Ddune-common_DIR=/home/fabian/dumux/dune-common/build-cmake" "-Ddune-geometry_DIR=/home/fabian/dumux/dune-geometry/build-cmake" -DCMAKE_CXX_FLAGS_RELEASE=' -fdiagnostics-color=always -fno-strict-aliasing -fstrict-overflow -fno-finite-math-only -DNDEBUG=1 -O3 -march=native -funroll-loops -g0 -Wall -Wunused -Wmissing-include-dirs -Wcast-align -Wno-missing-braces -Wmissing-field-initializers -Wno-sign-compare' -DCMAKE_CXX_FLAGS_DEBUG='-O0 -g -ggdb -Wall -Wextra -Wno-unused-parameter -Wno-sign-compare' -DCMAKE_CXX_FLAGS_RELWITHDEBINFO=' -fdiagnostics-color=always -fno-strict-aliasing -fstrict-overflow -fno-finite-math-only -DNDEBUG=1 -O3 -march=native -funroll-loops -g0 -Wall -Wunused -Wmissing-include-dirs -Wcast-align -Wno-missing-braces -Wmissing-field-initializers -Wno-sign-compare -g -ggdb -Wall' -DCMAKE_BUILD_TYPE=Release -DENABLE_HEADERCHECK=OFF -DDUNE_ENABLE_PYTHONBINDINGS=ON -DBUILD_SHARED_LIBS=ON -DCMAKE_POSITION_INDEPENDENT_CODE=ON -DDUNE_OPTS_FILE=/home/fabian/dumux/dumux/cmake.opts "/home/fabian/dumux/dune-localfunctions" -- Dependencies for dune-localfunctions: dune-geometry (>= 2.9) -- Dependencies for dune-geometry: dune-common (>= 2.9) -- Could NOT find LATEX (missing: LATEX_COMPILER) -- Could NOT find LatexMk (missing: LATEXMK_EXECUTABLE) -- Performing tests for dune-common (from /home/fabian/dumux/dune-common/cmake/modules/DuneCommonMacros.cmake) -- Set Minimal Debug Level to 4 -- A library with LAPACK API found. -- Could NOT find GMP (missing: GMPXX_LIB GMPXX_INCLUDE_DIR GMP_INCLUDE_DIR GMP_LIB) -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found suitable version "3.1", minimum required is "3.0") -- Found MPI: TRUE (found suitable version "3.1", minimum required is "3.0") found components: C -- Could NOT find TBB (set TBB_DIR to path containing TBBConfig.cmake or set PKG_CONFIG_PATH to include the location of the tbb.pc file) (missing: PkgConfigTBB_LINK_LIBRARIES PkgConfigTBB_FOUND) (found version "") -- Could NOT find PTScotch (missing: SCOTCH_LIBRARY SCOTCHERR_LIBRARY SCOTCH_INCLUDE_DIR) -- Could NOT find METIS (missing: METIS_LIBRARY METIS_INCLUDE_DIR METIS_API_VERSION) -- Could NOT find METIS (missing: METIS_LIBRARY METIS_INCLUDE_DIR METIS_API_VERSION) -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") found components: C -- Could NOT find ParMETIS (missing: PARMETIS_LIBRARY PARMETIS_INCLUDE_DIR METIS_FOUND) (Required is at least version "4.0") -- Detected Compiler: GCC 9 CMake Warning at /usr/local/lib/cmake/Vc/OptimizeForArchitecture.cmake:173 (message): Your CPU (family 6, model 154) is not known. Auto-detection of optimization flags failed and will use the 65nm Core 2 CPU settings. Call Stack (most recent call first): /usr/local/lib/cmake/Vc/OptimizeForArchitecture.cmake:247 (AutodetectHostArchitecture) /usr/local/lib/cmake/Vc/OptimizeForArchitecture.cmake:217 (OptimizeForArchitectureX86) /usr/local/lib/cmake/Vc/VcMacros.cmake:363 (OptimizeForArchitecture) /usr/local/lib/cmake/Vc/VcConfig.cmake:41 (vc_set_preferred_compiler_flags) /home/fabian/dumux/dune-common/cmake/modules/DuneCommonMacros.cmake:50 (find_package) /home/fabian/dumux/dune-common/cmake/modules/DuneModuleDependencies.cmake:112 (include) /home/fabian/dumux/dune-common/cmake/modules/DuneProject.cmake:123 (dune_process_dependency_macros) CMakeLists.txt:24 (dune_project) -- Detected CPU: merom -- Could NOT find Python3 (missing: Python3_INCLUDE_DIRS Development Development.Module Development.Embed) (found version "3.8.10") -- Failed to find the python package pip with interpreter /usr/bin/python3. (missing: DUNE_PYTHON_pip_FOUND) CMake Warning at /home/fabian/dumux/dune-common/cmake/modules/DunePythonCommonMacros.cmake:108 (message): Found a Python interpreter but the Python bindings also requires the Python libraries (a package named like python-dev package or python3-devel) Call Stack (most recent call first): /home/fabian/dumux/dune-common/cmake/modules/DuneCommonMacros.cmake:54 (include) /home/fabian/dumux/dune-common/cmake/modules/DuneModuleDependencies.cmake:112 (include) /home/fabian/dumux/dune-common/cmake/modules/DuneProject.cmake:123 (dune_process_dependency_macros) CMakeLists.txt:24 (dune_project) -- Setting dune-common_INCLUDE_DIRS=/home/fabian/dumux/dune-common -- Setting dune-common_LIBRARIES=dunecommon -- Setting dune-geometry_INCLUDE_DIRS=/home/fabian/dumux/dune-geometry -- Setting dune-geometry_LIBRARIES=dunegeometry -- Using scripts from /home/fabian/dumux/dune-common/cmake/scripts for creating doxygen stuff. -- using /home/fabian/dumux/dune-common/doc/doxygen/Doxystyle to create doxystyle file -- using C macro definitions from /home/fabian/dumux/dune-common/doc/doxygen/doxygen-macros for Doxygen -- Adding custom target for config.h generation -- The following OPTIONAL packages have been found: * Sphinx, Documentation generator, <www.sphinx-doc.org> To generate the documentation from CMake and Python sources * Doxygen, Class documentation generator, <www.doxygen.org> To generate the class documentation from C++ sources * BLAS, fast linear algebra routines * LAPACK, fast linear algebra routines * QuadMath, GCC Quad-Precision Math Library, <https://gcc.gnu.org/onlinedocs/libquadmath> * Inkscape, converts SVG images, <www.inkscape.org> To generate the documentation with LaTeX * Threads, Multi-threading library * PkgConfig, Unified interface for querying installed libraries To find Dune module dependencies * MPI, Message Passing Interface library Parallel programming on multiple processors * Vc, C++ Vectorization library, <https://github.com/VcDevel/Vc> For use of SIMD instructions -- The following REQUIRED packages have been found: * dune-common * dune-geometry -- The following OPTIONAL packages have not been found: * LATEX * LatexMk * GMP, GNU multi-precision library, <https://gmplib.org> * TBB, Intel's Threading Building Blocks, <https://github.com/oneapi-src/oneTBB> * PTScotch, Sequential and Parallel Graph Partitioning, <https://gitlab.inria.fr/scotch/scotch> * METIS, Serial Graph Partitioning, <http://glaros.dtc.umn.edu/gkhome/metis/metis/overview> * ParMETIS (required version >= 4.0), Parallel Graph Partitioning, <http://glaros.dtc.umn.edu/gkhome/metis/parmetis/overview> * Python3 -- Configuring done -- Generating done -- Build files have been written to: /home/fabian/dumux/dune-localfunctions/build-cmake --- calling make for dune-localfunctions --- build directory: build-cmake cmake --build . -- --- dune-localfunctions done --- --- calling all for dune-istl --- --- calling vcsetup for dune-istl --- --- calling cmake for dune-istl --- ----- using default flags $CMAKE_FLAGS from /home/fabian/dumux/dumux/cmake.opts ----- cmake -DCMAKE_CXX_FLAGS_RELEASE=' -fdiagnostics-color=always -fno-strict-aliasing -fstrict-overflow -fno-finite-math-only -DNDEBUG=1 -O3 -march=native -funroll-loops -g0 -Wall -Wunused -Wmissing-include-dirs -Wcast-align -Wno-missing-braces -Wmissing-field-initializers -Wno-sign-compare' -DCMAKE_CXX_FLAGS_DEBUG='-O0 -g -ggdb -Wall -Wextra -Wno-unused-parameter -Wno-sign-compare' -DCMAKE_CXX_FLAGS_RELWITHDEBINFO=' -fdiagnostics-color=always -fno-strict-aliasing -fstrict-overflow -fno-finite-math-only -DNDEBUG=1 -O3 -march=native -funroll-loops -g0 -Wall -Wunused -Wmissing-include-dirs -Wcast-align -Wno-missing-braces -Wmissing-field-initializers -Wno-sign-compare -g -ggdb -Wall' -DCMAKE_BUILD_TYPE=Release -DENABLE_HEADERCHECK=OFF -DDUNE_ENABLE_PYTHONBINDINGS=ON -DBUILD_SHARED_LIBS=ON -DCMAKE_POSITION_INDEPENDENT_CODE=ON "-Ddune-common_DIR=/home/fabian/dumux/dune-common/build-cmake" -DCMAKE_CXX_FLAGS_RELEASE=' -fdiagnostics-color=always -fno-strict-aliasing -fstrict-overflow -fno-finite-math-only -DNDEBUG=1 -O3 -march=native -funroll-loops -g0 -Wall -Wunused -Wmissing-include-dirs -Wcast-align -Wno-missing-braces -Wmissing-field-initializers -Wno-sign-compare' -DCMAKE_CXX_FLAGS_DEBUG='-O0 -g -ggdb -Wall -Wextra -Wno-unused-parameter -Wno-sign-compare' -DCMAKE_CXX_FLAGS_RELWITHDEBINFO=' -fdiagnostics-color=always -fno-strict-aliasing -fstrict-overflow -fno-finite-math-only -DNDEBUG=1 -O3 -march=native -funroll-loops -g0 -Wall -Wunused -Wmissing-include-dirs -Wcast-align -Wno-missing-braces -Wmissing-field-initializers -Wno-sign-compare -g -ggdb -Wall' -DCMAKE_BUILD_TYPE=Release -DENABLE_HEADERCHECK=OFF -DDUNE_ENABLE_PYTHONBINDINGS=ON -DBUILD_SHARED_LIBS=ON -DCMAKE_POSITION_INDEPENDENT_CODE=ON -DDUNE_OPTS_FILE=/home/fabian/dumux/dumux/cmake.opts "/home/fabian/dumux/dune-istl" -- Dependencies for dune-istl: dune-common (>= 2.9) -- Could NOT find LATEX (missing: LATEX_COMPILER) -- Could NOT find LatexMk (missing: LATEXMK_EXECUTABLE) -- Performing tests for dune-common (from /home/fabian/dumux/dune-common/cmake/modules/DuneCommonMacros.cmake) -- Set Minimal Debug Level to 4 -- A library with LAPACK API found. -- Could NOT find GMP (missing: GMPXX_LIB GMPXX_INCLUDE_DIR GMP_INCLUDE_DIR GMP_LIB) -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found suitable version "3.1", minimum required is "3.0") -- Found MPI: TRUE (found suitable version "3.1", minimum required is "3.0") found components: C -- Could NOT find TBB (set TBB_DIR to path containing TBBConfig.cmake or set PKG_CONFIG_PATH to include the location of the tbb.pc file) (missing: PkgConfigTBB_LINK_LIBRARIES PkgConfigTBB_FOUND) (found version "") -- Could NOT find PTScotch (missing: SCOTCH_LIBRARY SCOTCHERR_LIBRARY SCOTCH_INCLUDE_DIR) -- Could NOT find METIS (missing: METIS_LIBRARY METIS_INCLUDE_DIR METIS_API_VERSION) -- Could NOT find METIS (missing: METIS_LIBRARY METIS_INCLUDE_DIR METIS_API_VERSION) -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") found components: C -- Could NOT find ParMETIS (missing: PARMETIS_LIBRARY PARMETIS_INCLUDE_DIR METIS_FOUND) (Required is at least version "4.0") -- Detected Compiler: GCC 9 CMake Warning at /usr/local/lib/cmake/Vc/OptimizeForArchitecture.cmake:173 (message): Your CPU (family 6, model 154) is not known. Auto-detection of optimization flags failed and will use the 65nm Core 2 CPU settings. Call Stack (most recent call first): /usr/local/lib/cmake/Vc/OptimizeForArchitecture.cmake:247 (AutodetectHostArchitecture) /usr/local/lib/cmake/Vc/OptimizeForArchitecture.cmake:217 (OptimizeForArchitectureX86) /usr/local/lib/cmake/Vc/VcMacros.cmake:363 (OptimizeForArchitecture) /usr/local/lib/cmake/Vc/VcConfig.cmake:41 (vc_set_preferred_compiler_flags) /home/fabian/dumux/dune-common/cmake/modules/DuneCommonMacros.cmake:50 (find_package) /home/fabian/dumux/dune-common/cmake/modules/DuneModuleDependencies.cmake:112 (include) /home/fabian/dumux/dune-common/cmake/modules/DuneProject.cmake:123 (dune_process_dependency_macros) CMakeLists.txt:24 (dune_project) -- Detected CPU: merom -- Could NOT find Python3 (missing: Python3_INCLUDE_DIRS Development Development.Module Development.Embed) (found version "3.8.10") -- Failed to find the python package pip with interpreter /usr/bin/python3. (missing: DUNE_PYTHON_pip_FOUND) CMake Warning at /home/fabian/dumux/dune-common/cmake/modules/DunePythonCommonMacros.cmake:108 (message): Found a Python interpreter but the Python bindings also requires the Python libraries (a package named like python-dev package or python3-devel) Call Stack (most recent call first): /home/fabian/dumux/dune-common/cmake/modules/DuneCommonMacros.cmake:54 (include) /home/fabian/dumux/dune-common/cmake/modules/DuneModuleDependencies.cmake:112 (include) /home/fabian/dumux/dune-common/cmake/modules/DuneProject.cmake:123 (dune_process_dependency_macros) CMakeLists.txt:24 (dune_project) -- Setting dune-common_INCLUDE_DIRS=/home/fabian/dumux/dune-common -- Setting dune-common_LIBRARIES=dunecommon -- Performing tests for dune-istl (from /home/fabian/dumux/dune-istl/cmake/modules/DuneIstlMacros.cmake) -- Could NOT find METIS (missing: METIS_LIBRARY METIS_INCLUDE_DIR METIS_API_VERSION) -- Could NOT find METIS (missing: METIS_LIBRARY METIS_INCLUDE_DIR METIS_API_VERSION) -- Could NOT find ParMETIS (missing: PARMETIS_LIBRARY PARMETIS_INCLUDE_DIR METIS_FOUND) -- Could NOT find SuperLU (missing: SUPERLU_LIBRARY SUPERLU_INCLUDE_DIR SLU_UTIL_HEADER) (Required is at least version "5.0") -- Could NOT find ARPACK (missing: ARPACK_LIBRARY) -- Could NOT find ARPACKPP (missing: ARPACK_FOUND ARPACKPP_INCLUDE_DIR) -- Could NOT find SuiteSparse (missing: SUITESPARSE_CONFIG_LIB SUITESPARSE_INCLUDE_DIR) -- Using scripts from /home/fabian/dumux/dune-common/cmake/scripts for creating doxygen stuff. -- using /home/fabian/dumux/dune-common/doc/doxygen/Doxystyle to create doxystyle file -- using C macro definitions from /home/fabian/dumux/dune-common/doc/doxygen/doxygen-macros for Doxygen -- Adding custom target for config.h generation -- The following OPTIONAL packages have been found: * Sphinx, Documentation generator, <www.sphinx-doc.org> To generate the documentation from CMake and Python sources * Doxygen, Class documentation generator, <www.doxygen.org> To generate the class documentation from C++ sources * QuadMath, GCC Quad-Precision Math Library, <https://gcc.gnu.org/onlinedocs/libquadmath> * Inkscape, converts SVG images, <www.inkscape.org> To generate the documentation with LaTeX * PkgConfig, Unified interface for querying installed libraries To find Dune module dependencies * Vc, C++ Vectorization library, <https://github.com/VcDevel/Vc> For use of SIMD instructions * MPI, Message Passing Interface library Parallel programming on multiple processors * Threads, Multi-threading library -- The following REQUIRED packages have been found: * dune-common -- The following OPTIONAL packages have not been found: * LATEX * LatexMk * GMP, GNU multi-precision library, <https://gmplib.org> * TBB, Intel's Threading Building Blocks, <https://github.com/oneapi-src/oneTBB> * PTScotch, Sequential and Parallel Graph Partitioning, <https://gitlab.inria.fr/scotch/scotch> * Python3 * METIS, Serial Graph Partitioning, <http://glaros.dtc.umn.edu/gkhome/metis/metis/overview> * ParMETIS, Parallel Graph Partitioning, <http://glaros.dtc.umn.edu/gkhome/metis/parmetis/overview> * SuperLU (required version >= 5.0), Supernodal LU Direct solver for linear system, based on LU decomposition * ARPACK, ARnoldi PACKage Solve large scale eigenvalue problems * ARPACKPP, ARPACK++ C++ interface for ARPACK * SuiteSparse, A suite of sparse matrix software, <http://faculty.cse.tamu.edu/davis/suitesparse.html> -- Configuring done -- Generating done -- Build files have been written to: /home/fabian/dumux/dune-istl/build-cmake --- calling make for dune-istl --- build directory: build-cmake cmake --build . -- --- dune-istl done --- --- calling all for dumux --- --- calling vcsetup for dumux --- --- calling cmake for dumux --- ----- using default flags $CMAKE_FLAGS from /home/fabian/dumux/dumux/cmake.opts ----- cmake -DCMAKE_CXX_FLAGS_RELEASE=' -fdiagnostics-color=always -fno-strict-aliasing -fstrict-overflow -fno-finite-math-only -DNDEBUG=1 -O3 -march=native -funroll-loops -g0 -Wall -Wunused -Wmissing-include-dirs -Wcast-align -Wno-missing-braces -Wmissing-field-initializers -Wno-sign-compare' -DCMAKE_CXX_FLAGS_DEBUG='-O0 -g -ggdb -Wall -Wextra -Wno-unused-parameter -Wno-sign-compare' -DCMAKE_CXX_FLAGS_RELWITHDEBINFO=' -fdiagnostics-color=always -fno-strict-aliasing -fstrict-overflow -fno-finite-math-only -DNDEBUG=1 -O3 -march=native -funroll-loops -g0 -Wall -Wunused -Wmissing-include-dirs -Wcast-align -Wno-missing-braces -Wmissing-field-initializers -Wno-sign-compare -g -ggdb -Wall' -DCMAKE_BUILD_TYPE=Release -DENABLE_HEADERCHECK=OFF -DDUNE_ENABLE_PYTHONBINDINGS=ON -DBUILD_SHARED_LIBS=ON -DCMAKE_POSITION_INDEPENDENT_CODE=ON "-Ddune-common_DIR=/home/fabian/dumux/dune-common/build-cmake" "-Ddune-geometry_DIR=/home/fabian/dumux/dune-geometry/build-cmake" "-Ddune-grid_DIR=/home/fabian/dumux/dune-grid/build-cmake" "-Ddune-localfunctions_DIR=/home/fabian/dumux/dune-localfunctions/build-cmake" "-Ddune-istl_DIR=/home/fabian/dumux/dune-istl/build-cmake" -DCMAKE_CXX_FLAGS_RELEASE=' -fdiagnostics-color=always -fno-strict-aliasing -fstrict-overflow -fno-finite-math-only -DNDEBUG=1 -O3 -march=native -funroll-loops -g0 -Wall -Wunused -Wmissing-include-dirs -Wcast-align -Wno-missing-braces -Wmissing-field-initializers -Wno-sign-compare' -DCMAKE_CXX_FLAGS_DEBUG='-O0 -g -ggdb -Wall -Wextra -Wno-unused-parameter -Wno-sign-compare' -DCMAKE_CXX_FLAGS_RELWITHDEBINFO=' -fdiagnostics-color=always -fno-strict-aliasing -fstrict-overflow -fno-finite-math-only -DNDEBUG=1 -O3 -march=native -funroll-loops -g0 -Wall -Wunused -Wmissing-include-dirs -Wcast-align -Wno-missing-braces -Wmissing-field-initializers -Wno-sign-compare -g -ggdb -Wall' -DCMAKE_BUILD_TYPE=Release -DENABLE_HEADERCHECK=OFF -DDUNE_ENABLE_PYTHONBINDINGS=ON -DBUILD_SHARED_LIBS=ON -DCMAKE_POSITION_INDEPENDENT_CODE=ON -DDUNE_OPTS_FILE=/home/fabian/dumux/dumux/cmake.opts "/home/fabian/dumux/dumux" -- Dependencies for dumux: dune-common (>=2.9);dune-grid (>=2.9);dune-localfunctions (>=2.9);dune-istl (>=2.9) -- Suggestions for dumux: dune-alugrid (>=2.9);dune-foamgrid (>=2.9);dune-uggrid (>=2.9);dune-functions (>=2.9);opm-common;opm-grid;dune-subgrid (>=2.9);dune-spgrid (>=2.9);dune-mmesh (>=1.4) -- Dependencies for dune-grid: dune-geometry (>= 2.9) -- Suggestions for dune-grid: dune-uggrid (>=2.9) -- Dependencies for dune-localfunctions: dune-geometry (>= 2.9) -- Dependencies for dune-istl: dune-common (>= 2.9) -- Could NOT find dune-alugrid (missing: dune-alugrid_DIR) -- No full CMake package configuration support available. Falling back to pkg-config. -- Checking for module 'dune-alugrid>=2.9' -- No package 'dune-alugrid' found -- Could NOT find dune-foamgrid (missing: dune-foamgrid_DIR) -- No full CMake package configuration support available. Falling back to pkg-config. -- Checking for module 'dune-foamgrid>=2.9' -- No package 'dune-foamgrid' found -- Could NOT find dune-uggrid (missing: dune-uggrid_DIR) -- No full CMake package configuration support available. Falling back to pkg-config. -- Checking for module 'dune-uggrid>=2.9' -- No package 'dune-uggrid' found -- Could NOT find dune-functions (missing: dune-functions_DIR) -- No full CMake package configuration support available. Falling back to pkg-config. -- Checking for module 'dune-functions>=2.9' -- No package 'dune-functions' found -- Could NOT find opm-common (missing: opm-common_DIR) -- No full CMake package configuration support available. Falling back to pkg-config. -- Checking for module 'opm-common ' -- No package 'opm-common' found -- Could NOT find opm-grid (missing: opm-grid_DIR) -- No full CMake package configuration support available. Falling back to pkg-config. -- Checking for module 'opm-grid ' -- No package 'opm-grid' found -- Could NOT find dune-subgrid (missing: dune-subgrid_DIR) -- No full CMake package configuration support available. Falling back to pkg-config. -- Checking for module 'dune-subgrid>=2.9' -- No package 'dune-subgrid' found -- Could NOT find dune-spgrid (missing: dune-spgrid_DIR) -- No full CMake package configuration support available. Falling back to pkg-config. -- Checking for module 'dune-spgrid>=2.9' -- No package 'dune-spgrid' found -- Could NOT find dune-mmesh (missing: dune-mmesh_DIR) -- No full CMake package configuration support available. Falling back to pkg-config. -- Checking for module 'dune-mmesh>=1.4' -- No package 'dune-mmesh' found -- Dependencies for dune-geometry: dune-common (>= 2.9) -- Could NOT find dune-uggrid (missing: dune-uggrid_DIR) -- No full CMake package configuration support available. Falling back to pkg-config. -- Checking for module 'dune-uggrid>=2.9' -- No package 'dune-uggrid' found -- Could NOT find LATEX (missing: LATEX_COMPILER) -- Could NOT find LatexMk (missing: LATEXMK_EXECUTABLE) -- Performing tests for dune-common (from /home/fabian/dumux/dune-common/cmake/modules/DuneCommonMacros.cmake) -- Set Minimal Debug Level to 4 -- A library with LAPACK API found. -- Could NOT find GMP (missing: GMPXX_LIB GMPXX_INCLUDE_DIR GMP_INCLUDE_DIR GMP_LIB) -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found suitable version "3.1", minimum required is "3.0") -- Found MPI: TRUE (found suitable version "3.1", minimum required is "3.0") found components: C -- Could NOT find TBB (set TBB_DIR to path containing TBBConfig.cmake or set PKG_CONFIG_PATH to include the location of the tbb.pc file) (missing: PkgConfigTBB_LINK_LIBRARIES PkgConfigTBB_FOUND) (found version "") -- Could NOT find PTScotch (missing: SCOTCH_LIBRARY SCOTCHERR_LIBRARY SCOTCH_INCLUDE_DIR) -- Could NOT find METIS (missing: METIS_LIBRARY METIS_INCLUDE_DIR METIS_API_VERSION) -- Could NOT find METIS (missing: METIS_LIBRARY METIS_INCLUDE_DIR METIS_API_VERSION) -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") found components: C -- Could NOT find ParMETIS (missing: PARMETIS_LIBRARY PARMETIS_INCLUDE_DIR METIS_FOUND) (Required is at least version "4.0") -- Detected Compiler: GCC 9 CMake Warning at /usr/local/lib/cmake/Vc/OptimizeForArchitecture.cmake:173 (message): Your CPU (family 6, model 154) is not known. Auto-detection of optimization flags failed and will use the 65nm Core 2 CPU settings. Call Stack (most recent call first): /usr/local/lib/cmake/Vc/OptimizeForArchitecture.cmake:247 (AutodetectHostArchitecture) /usr/local/lib/cmake/Vc/OptimizeForArchitecture.cmake:217 (OptimizeForArchitectureX86) /usr/local/lib/cmake/Vc/VcMacros.cmake:363 (OptimizeForArchitecture) /usr/local/lib/cmake/Vc/VcConfig.cmake:41 (vc_set_preferred_compiler_flags) /home/fabian/dumux/dune-common/cmake/modules/DuneCommonMacros.cmake:50 (find_package) /home/fabian/dumux/dune-common/cmake/modules/DuneModuleDependencies.cmake:112 (include) /home/fabian/dumux/dune-common/cmake/modules/DuneProject.cmake:123 (dune_process_dependency_macros) CMakeLists.txt:52 (dune_project) -- Detected CPU: merom -- Could NOT find Python3 (missing: Python3_INCLUDE_DIRS Development Development.Module Development.Embed) (found version "3.8.10") -- Failed to find the python package pip with interpreter /usr/bin/python3. (missing: DUNE_PYTHON_pip_FOUND) CMake Warning at /home/fabian/dumux/dune-common/cmake/modules/DunePythonCommonMacros.cmake:108 (message): Found a Python interpreter but the Python bindings also requires the Python libraries (a package named like python-dev package or python3-devel) Call Stack (most recent call first): /home/fabian/dumux/dune-common/cmake/modules/DuneCommonMacros.cmake:54 (include) /home/fabian/dumux/dune-common/cmake/modules/DuneModuleDependencies.cmake:112 (include) /home/fabian/dumux/dune-common/cmake/modules/DuneProject.cmake:123 (dune_process_dependency_macros) CMakeLists.txt:52 (dune_project) -- Setting dune-common_INCLUDE_DIRS=/home/fabian/dumux/dune-common -- Setting dune-common_LIBRARIES=dunecommon -- Setting dune-geometry_INCLUDE_DIRS=/home/fabian/dumux/dune-geometry -- Setting dune-geometry_LIBRARIES=dunegeometry -- Performing tests for dune-istl (from /home/fabian/dumux/dune-istl/cmake/modules/DuneIstlMacros.cmake) -- Could NOT find METIS (missing: METIS_LIBRARY METIS_INCLUDE_DIR METIS_API_VERSION) -- Could NOT find METIS (missing: METIS_LIBRARY METIS_INCLUDE_DIR METIS_API_VERSION) -- Could NOT find ParMETIS (missing: PARMETIS_LIBRARY PARMETIS_INCLUDE_DIR METIS_FOUND) -- Could NOT find SuperLU (missing: SUPERLU_LIBRARY SUPERLU_INCLUDE_DIR SLU_UTIL_HEADER) (Required is at least version "5.0") -- Could NOT find ARPACK (missing: ARPACK_LIBRARY) -- Could NOT find ARPACKPP (missing: ARPACK_FOUND ARPACKPP_INCLUDE_DIR) -- Could NOT find SuiteSparse (missing: SUITESPARSE_CONFIG_LIB SUITESPARSE_INCLUDE_DIR) -- Setting dune-istl_INCLUDE_DIRS=/home/fabian/dumux/dune-istl -- Setting dune-localfunctions_INCLUDE_DIRS=/home/fabian/dumux/dune-localfunctions -- Performing tests for dune-grid (from /home/fabian/dumux/dune-grid/cmake/modules/DuneGridMacros.cmake) -- Could NOT find METIS (missing: METIS_LIBRARY METIS_INCLUDE_DIR METIS_API_VERSION) -- Could NOT find METIS (missing: METIS_LIBRARY METIS_INCLUDE_DIR METIS_API_VERSION) -- Could NOT find ParMETIS (missing: PARMETIS_LIBRARY PARMETIS_INCLUDE_DIR METIS_FOUND) -- Checking for module 'alberta-grid_1d>=3.0' -- No package 'alberta-grid_1d' found -- Checking for module 'alberta-grid_2d>=3.0' -- No package 'alberta-grid_2d' found -- Checking for module 'alberta-grid_3d>=3.0' -- No package 'alberta-grid_3d' found -- Could NOT find Alberta (set PKG_CONFIG_PATH to include the location of the alberta-grid_[n]d.pc files) (missing: ALBERTA_GRID_PREFIX) (Required is at least version "3.0") -- Setting dune-grid_INCLUDE_DIRS=/home/fabian/dumux/dune-grid -- Setting dune-grid_LIBRARIES=dunegrid -- Performing tests for dumux (from /home/fabian/dumux/dumux/cmake/modules/DumuxMacros.cmake) -- Could NOT find TBB (set TBB_DIR to path containing TBBConfig.cmake or set PKG_CONFIG_PATH to include the location of the tbb.pc file) (missing: PkgConfigTBB_LINK_LIBRARIES PkgConfigTBB_FOUND) (found version "") -- Dumux multithreading backend: OpenMP -- Using scripts from /home/fabian/dumux/dune-common/cmake/scripts for creating doxygen stuff. -- using /home/fabian/dumux/dune-common/doc/doxygen/Doxystyle to create doxystyle file -- using C macro definitions from /home/fabian/dumux/dune-common/doc/doxygen/doxygen-macros for Doxygen CMake Error at python/dumux/assembly/CMakeLists.txt:4 (add_python_targets): Unknown CMake command "add_python_targets". -- Configuring incomplete, errors occurred! See also "/home/fabian/dumux/dumux/build-cmake/CMakeFiles/CMakeOutput.log". See also "/home/fabian/dumux/dumux/build-cmake/CMakeFiles/CMakeError.log". --- Failed to build dumux --- Terminating dunecontrol due to previous errors! The command ./dune-common/bin/dunecontrol --opts=dumux/cmake.opts all returned with non-zero exit code. You find the error message in the file 'installdumux.log'. If you can't fix the problem yourself consider reporting your issue on the mailing list ([email protected]) and attach the file 'installdumux.log'.
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