Dear EasyFriends,
While duplication of work is a really good way to catch errors, we could
reduce it a bit;
Here are the packages we are working on these days at The Cyprus
Institute with respect to Bioinformatics:
"Packages" with a pull request already submitted or to be submitted
within a few days (I'm not sure if we'll make the freeze):
PLINK
AllPathslg
bam2fastq
bwa
EMBOSS
paml
GATK
"Packages" with configs/blocks in easybuild.experimental
MUSCLE
CD-HIT
RaxML
RepeatMasker
GPU-BLAST
CUDA-BLASTP
"Packages" on our immediate to-do list:
BioPython
Bioconductor
Bioperl
Oases
bamtools
blat
bowtie
fasta
fastqc
freebayes
mrbayes
beagle lib
Picard-tools
glimmer
"Packages" on no-so-immediate to-do list:
Phrap
Phred
Consed
Abyss
lastz
All feedback is welcome!
Thanks!
George Tsouloupas,
HPC Operations
CaSToRC, the Cyprus Institute.
