Hi, why are all these package to-do list? They are already included see https://github.com/hpcugent/easybuild/wiki/List-of-supported-software-packages
abyss https://github.com/hpcugent/easybuild-easyconfigs/tree/develop/easybuild/easyconfigs/a/ABySS bioperl: https://github.com/hpcugent/easybuild-easyconfigs/blob/master/easybuild/easyconfigs/p/Perl/Perl-5.16.3-goolf-1.4.10.eb and https://github.com/hpcugent/easybuild-easyconfigs/blob/develop/easybuild/easyconfigs/b/BioPerl/BioPerl-1.6.1-goolf-1.4.10-Perl-5.16.3.eb bowtie https://github.com/hpcugent/easybuild-easyconfigs/tree/master/easybuild/easyconfigs/b/Bowtie bwa https://github.com/hpcugent/easybuild-easyconfigs/tree/develop/easybuild/easyconfigs/b/BWA mrbayes https://github.com/hpcugent/easybuild-easyconfigs/tree/develop/easybuild/easyconfigs/m/MrBayes beagle https://github.com/hpcugent/easybuild-easyconfigs/tree/develop/easybuild/easyconfigs/b/BEAGLE regards Jens Timmerman On 23 May 2013 12:46, George Tsouloupas <[email protected]> wrote: > Dear EasyFriends, > > While duplication of work is a really good way to catch errors, we could > reduce it a bit; > Here are the packages we are working on these days at The Cyprus Institute > with respect to Bioinformatics: > > > "Packages" with a pull request already submitted or to be submitted within > a few days (I'm not sure if we'll make the freeze): > PLINK > AllPathslg > bam2fastq > bwa > EMBOSS > paml > GATK > > "Packages" with configs/blocks in easybuild.experimental > MUSCLE > CD-HIT > RaxML > RepeatMasker > GPU-BLAST > CUDA-BLASTP > > "Packages" on our immediate to-do list: > BioPython > Bioconductor > Bioperl > Oases > bamtools > blat > bowtie > fasta > fastqc > freebayes > mrbayes > beagle lib > Picard-tools > glimmer > > "Packages" on no-so-immediate to-do list: > Phrap > Phred > Consed > Abyss > lastz > > > All feedback is welcome! > > Thanks! > > George Tsouloupas, > HPC Operations > CaSToRC, the Cyprus Institute. > > > >
