On Tue, 15 Oct 2013 08:42:36 +0200 Kenneth Hoste <[email protected]> wrote:
> Hello, > > On 14 Oct 2013, at 23:07, Fotis Georgatos wrote: > > > > > Hi Jure, > > > > I suspect you are hitting something like this one (ie. check your license > > manager check-outs): > > https://github.com/hpcugent/easybuild-easyconfigs/issues/382 > > it was nasty one to debug 'cause it was a silent error, as what you > > described > > and everything appeared to be fine on the surface. > > Jure, if you can confirm this is the problem you're faced with, please > indicate so in the issue mentioned by Fotis (so it gets bumped). I will, once I'm sure it's the same issue. > Apparently, you've ended up with an incomplete installation of imkl, and the > EasyBuild framework is only complaining about that when you're trying to use > imkl (which is what issue #382 is about). > > Can you provide a directory listing for the directories mkl/lib/intel64 and > compiler/lib/intel64 in your imkl installaiton (it's possible not both paths > are there). > > Which version of ictce / imkl is this exactly? It's what comes within parallel_studio_xe_2013_sp1.tgz tarball. According to mkl.h it is 11.1.0. I'm using this tarball with eval licences just to get my whole puppet/hpc/eb shebang working and this is one of the last few issues I still have open. # ll /opt/intel/mkl/lib/intel64/ total 756204 -rw-r--r-- 1 root root 42156 Oct 11 13:41 libfftw3x_cdft_lp64.a -rwxr-xr-x 1 root root 29252291 Jul 31 11:16 libmkl_avx2.so -rwxr-xr-x 1 root root 28981559 Jul 31 11:16 libmkl_avx.so -rw-r--r-- 1 root root 1230176 Jul 31 11:16 libmkl_blacs_ilp64.a -rw-r--r-- 1 root root 1231464 Jul 31 11:16 libmkl_blacs_intelmpi_ilp64.a -rwxr-xr-x 1 root root 489330 Jul 31 11:16 libmkl_blacs_intelmpi_ilp64.so -rw-r--r-- 1 root root 709990 Jul 31 11:16 libmkl_blacs_intelmpi_lp64.a -rwxr-xr-x 1 root root 271049 Jul 31 11:16 libmkl_blacs_intelmpi_lp64.so -rw-r--r-- 1 root root 708710 Jul 31 11:16 libmkl_blacs_lp64.a -rw-r--r-- 1 root root 1257650 Jul 31 11:16 libmkl_blacs_openmpi_ilp64.a -rw-r--r-- 1 root root 736706 Jul 31 11:16 libmkl_blacs_openmpi_lp64.a -rw-r--r-- 1 root root 1231024 Jul 31 11:16 libmkl_blacs_sgimpt_ilp64.a -rw-r--r-- 1 root root 709558 Jul 31 11:16 libmkl_blacs_sgimpt_lp64.a -rw-r--r-- 1 root root 530522 Jul 31 11:16 libmkl_blas95_ilp64.a -rw-r--r-- 1 root root 524210 Jul 31 11:16 libmkl_blas95_lp64.a -rw-r--r-- 1 root root 129792 Jul 31 11:16 libmkl_cdft_core.a -rwxr-xr-x 1 root root 104448 Jul 31 11:16 libmkl_cdft_core.so -rw-r--r-- 1 root root 297836388 Jul 31 11:16 libmkl_core.a -rwxr-xr-x 1 root root 21814571 Jul 31 11:16 libmkl_core.so -rwxr-xr-x 1 root root 21729779 Jul 31 11:16 libmkl_def.so -rw-r--r-- 1 root root 15065672 Jul 31 11:16 libmkl_gf_ilp64.a -rwxr-xr-x 1 root root 6443482 Jul 31 11:16 libmkl_gf_ilp64.so -rw-r--r-- 1 root root 15273242 Jul 31 11:16 libmkl_gf_lp64.a -rwxr-xr-x 1 root root 6510150 Jul 31 11:16 libmkl_gf_lp64.so -rw-r--r-- 1 root root 14871818 Jul 31 11:16 libmkl_gnu_thread.a -rwxr-xr-x 1 root root 10472662 Jul 31 11:16 libmkl_gnu_thread.so -rw-r--r-- 1 root root 15071570 Jul 31 11:16 libmkl_intel_ilp64.a -rwxr-xr-x 1 root root 6449975 Jul 31 11:16 libmkl_intel_ilp64.so -rw-r--r-- 1 root root 15278518 Jul 31 11:16 libmkl_intel_lp64.a -rwxr-xr-x 1 root root 6516643 Jul 31 11:16 libmkl_intel_lp64.so -rw-r--r-- 1 root root 24489474 Jul 31 11:16 libmkl_intel_thread.a -rwxr-xr-x 1 root root 17414986 Jul 31 11:16 libmkl_intel_thread.so -rw-r--r-- 1 root root 7470788 Jul 31 11:16 libmkl_lapack95_ilp64.a -rw-r--r-- 1 root root 7394724 Jul 31 11:16 libmkl_lapack95_lp64.a -rwxr-xr-x 1 root root 29104260 Jul 31 11:16 libmkl_mc3.so -rwxr-xr-x 1 root root 26589655 Jul 31 11:16 libmkl_mc.so -rwxr-xr-x 1 root root 23130558 Jul 31 11:16 libmkl_p4n.so -rwxr-xr-x 1 root root 4467561 Jul 31 11:16 libmkl_rt.so -rw-r--r-- 1 root root 11558248 Jul 31 11:16 libmkl_scalapack_ilp64.a -rwxr-xr-x 1 root root 7317953 Jul 31 11:16 libmkl_scalapack_ilp64.so -rw-r--r-- 1 root root 11513746 Jul 31 11:16 libmkl_scalapack_lp64.a -rwxr-xr-x 1 root root 7233551 Jul 31 11:16 libmkl_scalapack_lp64.so -rw-r--r-- 1 root root 8075634 Jul 31 11:16 libmkl_sequential.a -rwxr-xr-x 1 root root 5594212 Jul 31 11:16 libmkl_sequential.so -rwxr-xr-x 1 root root 11079473 Jul 31 11:16 libmkl_vml_avx2.so -rwxr-xr-x 1 root root 9868205 Jul 31 11:16 libmkl_vml_avx.so -rwxr-xr-x 1 root root 4450359 Jul 31 11:16 libmkl_vml_cmpt.so -rwxr-xr-x 1 root root 4606219 Jul 31 11:16 libmkl_vml_def.so -rwxr-xr-x 1 root root 8151598 Jul 31 11:16 libmkl_vml_mc2.so -rwxr-xr-x 1 root root 8404841 Jul 31 11:16 libmkl_vml_mc3.so -rwxr-xr-x 1 root root 8146773 Jul 31 11:16 libmkl_vml_mc.so -rwxr-xr-x 1 root root 6717288 Jul 31 11:16 libmkl_vml_p4n.so drwxr-xr-x 4 root root 4096 Sep 20 19:19 locale There's no compiler dir, maybe you mean this one? # ll /opt/intel/composerxe/lib/intel64/ total 124292 -rwxr-xr-x 1 root root 49691 Jul 31 11:13 cilk_db.so -rwxr-xr-x 1 root root 10634348 Jul 31 11:13 codecov_libFNP.so drwxr-xr-x 2 root root 4096 Sep 20 19:17 crt -rwxr-xr-x 1 root root 1680 Jul 31 11:13 for_main.o -rwxr-xr-x 1 root root 10634352 Jul 31 11:13 icc_libFNP.so -rwxr-xr-x 1 root root 10634208 Jul 31 11:13 icpc_libFNP.so -rwxr-xr-x 1 root root 10634104 Jul 31 11:13 ifort_libFNP.so -rwxr-xr-x 1 root root 1704 Jul 31 11:13 init.o drwxr-xr-x 2 root root 4096 Sep 20 19:17 irml -rwxr-xr-x 1 root root 207532 Jul 31 11:13 libbfp754.a -rwxr-xr-x 1 root root 30324 Jul 31 11:13 libchkp.so -rwxr-xr-x 1 root root 71710 Jul 31 11:13 libchkpwrap.a -rwxr-xr-x 1 root root 60592 Jul 31 11:13 libchkpwrap_w.a -rwxr-xr-x 1 root root 24 Jul 31 11:13 libcilkrts.so -rwxr-xr-x 1 root root 299306 Jul 31 11:13 libcilkrts.so.5 -rwxr-xr-x 1 root root 72736 Jul 31 11:13 libcomposerxe_boost_date_time_1.34.so -rwxr-xr-x 1 root root 91864 Jul 31 11:13 libcomposerxe_boost_filesystem_1.34.so -rwxr-xr-x 1 root root 820288 Jul 31 11:13 libcomposerxe_boost_regex_1.34.so -rwxr-xr-x 1 root root 16384 Jul 31 11:13 libcomposerxe_boost_system_1.34.so -rwxr-xr-x 1 root root 90528 Jul 31 11:13 libcomposerxe_boost_thread_1.34.so -rwxr-xr-x 1 root root 558688 Jul 31 11:13 libcomposerxe_cfgmgr_2.4.so -rwxr-xr-x 1 root root 229633 Jul 31 11:13 libcomposerxe_clpt_3.1.so -rwxr-xr-x 1 root root 952504 Jul 31 11:13 libcomposerxe_cpil_2.10.so -rwxr-xr-x 1 root root 370824 Jul 31 11:13 libcomposerxe_gen_helpers_core_2.3.so -rwxr-xr-x 1 root root 311976 Jul 31 11:13 libcomposerxe_gen_helpers_das_2.3.so -rwxr-xr-x 1 root root 1354488 Jul 31 11:13 libcomposerxe_libxml_2.7.so -rwxr-xr-x 1 root root 85384 Jul 31 11:13 libcomposerxe_msngr_cmd_2.4.so -rwxr-xr-x 1 root root 50312 Jul 31 11:13 libcomposerxe_msngr_reader_2.4.so -rwxr-xr-x 1 root root 55144 Jul 31 11:13 libcomposerxe_msngr_util_2.4.so -rwxr-xr-x 1 root root 155568 Jul 31 11:13 libcomposerxe_rdmgr_2.1.so -rwxr-xr-x 1 root root 4983254 Jul 31 11:13 libdecimal.a -rwxr-xr-x 1 root root 48120 Jul 31 11:13 libicaf.so -rwxr-xr-x 1 root root 2067150 Jul 31 11:13 libifcore.a -rwxr-xr-x 1 root root 2103170 Jul 31 11:13 libifcoremt.a -rwxr-xr-x 1 root root 1811338 Jul 31 11:13 libifcoremt_pic.a -rwxr-xr-x 1 root root 26 Jul 31 11:13 libifcoremt.so -rwxr-xr-x 1 root root 1383688 Jul 31 11:13 libifcoremt.so.5 -rwxr-xr-x 1 root root 1781918 Jul 31 11:13 libifcore_pic.a -rwxr-xr-x 1 root root 24 Jul 31 11:13 libifcore.so -rwxr-xr-x 1 root root 1370356 Jul 31 11:13 libifcore.so.5 -rwxr-xr-x 1 root root 628904 Jul 31 11:13 libifport.a -rwxr-xr-x 1 root root 24 Jul 31 11:13 libifport.so -rwxr-xr-x 1 root root 238534 Jul 31 11:13 libifport.so.5 -rwxr-xr-x 1 root root 5178356 Jul 31 11:13 libimf.a -rwxr-xr-x 1 root root 3123213 Jul 31 11:13 libimf.so -rwxr-xr-x 1 root root 22 Jul 31 11:13 libintlc.so -rwxr-xr-x 1 root root 381139 Jul 31 11:13 libintlc.so.5 -rwxr-xr-x 1 root root 1785630 Jul 31 11:13 libiomp5.a -rwxr-xr-x 1 root root 2399774 Jul 31 11:13 libiomp5.dbg -rwxr-xr-x 1 root root 1213154 Jul 31 11:13 libiomp5.so -rwxr-xr-x 1 root root 55778 Jul 31 11:13 libiompstubs5.a -rwxr-xr-x 1 root root 48020 Jul 31 11:13 libiompstubs5.so -rwxr-xr-x 1 root root 117948 Jul 31 11:13 libipgo.a -rwxr-xr-x 1 root root 619096 Jul 31 11:13 libirc.a -rwxr-xr-x 1 root root 7712 Jul 31 11:13 libirc_s.a -rwxr-xr-x 1 root root 381139 Jul 31 11:13 libirc.so -rwxr-xr-x 1 root root 45530 Jul 31 11:13 libirng.a -rwxr-xr-x 1 root root 33601 Jul 31 11:13 libirng.so -rwxr-xr-x 1 root root 8632112 Jul 31 11:13 libmatmul.a -rwxr-xr-x 1 root root 25 Jul 31 11:13 liboffload.so -rwxr-xr-x 1 root root 228027 Jul 31 11:13 liboffload.so.5 -rwxr-xr-x 1 root root 227004 Jul 31 11:13 libomp_db.so -rwxr-xr-x 1 root root 213554 Jul 31 11:13 libpdbx.a -rwxr-xr-x 1 root root 18256 Jul 31 11:13 libpdbxinst.a -rwxr-xr-x 1 root root 22 Jul 31 11:13 libpdbx.so -rwxr-xr-x 1 root root 137571 Jul 31 11:13 libpdbx.so.5 -rwxr-xr-x 1 root root 17091336 Jul 31 11:13 libsvml.a -rwxr-xr-x 1 root root 9621938 Jul 31 11:13 libsvml.so drwxr-xr-x 3 root root 4096 Jul 31 11:17 locale -rw-r--r-- 1 root root 4288 Jul 31 11:13 ofldbegin.o -rw-r--r-- 1 root root 1856 Jul 31 11:13 ofldend.o -rwxr-xr-x 1 root root 10634100 Jul 31 11:13 tselect_libFNP.so -- Jure Pečar http://jure.pecar.org
