Hi Jure, On 15 Oct 2013, at 11:06, Jure Pečar wrote:
> On Tue, 15 Oct 2013 08:42:36 +0200 > Kenneth Hoste <[email protected]> wrote: > >> Hello, >> >> On 14 Oct 2013, at 23:07, Fotis Georgatos wrote: >> >>> >>> Hi Jure, >>> >>> I suspect you are hitting something like this one (ie. check your license >>> manager check-outs): >>> https://github.com/hpcugent/easybuild-easyconfigs/issues/382 >>> it was nasty one to debug 'cause it was a silent error, as what you >>> described >>> and everything appeared to be fine on the surface. >> >> Jure, if you can confirm this is the problem you're faced with, please >> indicate so in the issue mentioned by Fotis (so it gets bumped). > > I will, once I'm sure it's the same issue. > >> Apparently, you've ended up with an incomplete installation of imkl, and the >> EasyBuild framework is only complaining about that when you're trying to use >> imkl (which is what issue #382 is about). >> >> Can you provide a directory listing for the directories mkl/lib/intel64 and >> compiler/lib/intel64 in your imkl installaiton (it's possible not both paths >> are there). >> >> Which version of ictce / imkl is this exactly? > > It's what comes within parallel_studio_xe_2013_sp1.tgz tarball. According to > mkl.h it is 11.1.0. I'm using this tarball with eval licences just to get my > whole puppet/hpc/eb shebang working and this is one of the last few issues I > still have open. Hold on... Are you saying you just unpacked the tarball, or installed Intel MKL from that tarball yourself, as opposed to letting EasyBuild install MKL? That's not going to work, EasyBuild does more than just install Intel MKL, it also builds the FFT wrappers (which is exactly what you're missing) according to the original error message. Any reason why you're not using EasyBuild to install imkl? regards, Kenneth > > # ll /opt/intel/mkl/lib/intel64/ > total 756204 > -rw-r--r-- 1 root root 42156 Oct 11 13:41 libfftw3x_cdft_lp64.a > -rwxr-xr-x 1 root root 29252291 Jul 31 11:16 libmkl_avx2.so > -rwxr-xr-x 1 root root 28981559 Jul 31 11:16 libmkl_avx.so > -rw-r--r-- 1 root root 1230176 Jul 31 11:16 libmkl_blacs_ilp64.a > -rw-r--r-- 1 root root 1231464 Jul 31 11:16 libmkl_blacs_intelmpi_ilp64.a > -rwxr-xr-x 1 root root 489330 Jul 31 11:16 libmkl_blacs_intelmpi_ilp64.so > -rw-r--r-- 1 root root 709990 Jul 31 11:16 libmkl_blacs_intelmpi_lp64.a > -rwxr-xr-x 1 root root 271049 Jul 31 11:16 libmkl_blacs_intelmpi_lp64.so > -rw-r--r-- 1 root root 708710 Jul 31 11:16 libmkl_blacs_lp64.a > -rw-r--r-- 1 root root 1257650 Jul 31 11:16 libmkl_blacs_openmpi_ilp64.a > -rw-r--r-- 1 root root 736706 Jul 31 11:16 libmkl_blacs_openmpi_lp64.a > -rw-r--r-- 1 root root 1231024 Jul 31 11:16 libmkl_blacs_sgimpt_ilp64.a > -rw-r--r-- 1 root root 709558 Jul 31 11:16 libmkl_blacs_sgimpt_lp64.a > -rw-r--r-- 1 root root 530522 Jul 31 11:16 libmkl_blas95_ilp64.a > -rw-r--r-- 1 root root 524210 Jul 31 11:16 libmkl_blas95_lp64.a > -rw-r--r-- 1 root root 129792 Jul 31 11:16 libmkl_cdft_core.a > -rwxr-xr-x 1 root root 104448 Jul 31 11:16 libmkl_cdft_core.so > -rw-r--r-- 1 root root 297836388 Jul 31 11:16 libmkl_core.a > -rwxr-xr-x 1 root root 21814571 Jul 31 11:16 libmkl_core.so > -rwxr-xr-x 1 root root 21729779 Jul 31 11:16 libmkl_def.so > -rw-r--r-- 1 root root 15065672 Jul 31 11:16 libmkl_gf_ilp64.a > -rwxr-xr-x 1 root root 6443482 Jul 31 11:16 libmkl_gf_ilp64.so > -rw-r--r-- 1 root root 15273242 Jul 31 11:16 libmkl_gf_lp64.a > -rwxr-xr-x 1 root root 6510150 Jul 31 11:16 libmkl_gf_lp64.so > -rw-r--r-- 1 root root 14871818 Jul 31 11:16 libmkl_gnu_thread.a > -rwxr-xr-x 1 root root 10472662 Jul 31 11:16 libmkl_gnu_thread.so > -rw-r--r-- 1 root root 15071570 Jul 31 11:16 libmkl_intel_ilp64.a > -rwxr-xr-x 1 root root 6449975 Jul 31 11:16 libmkl_intel_ilp64.so > -rw-r--r-- 1 root root 15278518 Jul 31 11:16 libmkl_intel_lp64.a > -rwxr-xr-x 1 root root 6516643 Jul 31 11:16 libmkl_intel_lp64.so > -rw-r--r-- 1 root root 24489474 Jul 31 11:16 libmkl_intel_thread.a > -rwxr-xr-x 1 root root 17414986 Jul 31 11:16 libmkl_intel_thread.so > -rw-r--r-- 1 root root 7470788 Jul 31 11:16 libmkl_lapack95_ilp64.a > -rw-r--r-- 1 root root 7394724 Jul 31 11:16 libmkl_lapack95_lp64.a > -rwxr-xr-x 1 root root 29104260 Jul 31 11:16 libmkl_mc3.so > -rwxr-xr-x 1 root root 26589655 Jul 31 11:16 libmkl_mc.so > -rwxr-xr-x 1 root root 23130558 Jul 31 11:16 libmkl_p4n.so > -rwxr-xr-x 1 root root 4467561 Jul 31 11:16 libmkl_rt.so > -rw-r--r-- 1 root root 11558248 Jul 31 11:16 libmkl_scalapack_ilp64.a > -rwxr-xr-x 1 root root 7317953 Jul 31 11:16 libmkl_scalapack_ilp64.so > -rw-r--r-- 1 root root 11513746 Jul 31 11:16 libmkl_scalapack_lp64.a > -rwxr-xr-x 1 root root 7233551 Jul 31 11:16 libmkl_scalapack_lp64.so > -rw-r--r-- 1 root root 8075634 Jul 31 11:16 libmkl_sequential.a > -rwxr-xr-x 1 root root 5594212 Jul 31 11:16 libmkl_sequential.so > -rwxr-xr-x 1 root root 11079473 Jul 31 11:16 libmkl_vml_avx2.so > -rwxr-xr-x 1 root root 9868205 Jul 31 11:16 libmkl_vml_avx.so > -rwxr-xr-x 1 root root 4450359 Jul 31 11:16 libmkl_vml_cmpt.so > -rwxr-xr-x 1 root root 4606219 Jul 31 11:16 libmkl_vml_def.so > -rwxr-xr-x 1 root root 8151598 Jul 31 11:16 libmkl_vml_mc2.so > -rwxr-xr-x 1 root root 8404841 Jul 31 11:16 libmkl_vml_mc3.so > -rwxr-xr-x 1 root root 8146773 Jul 31 11:16 libmkl_vml_mc.so > -rwxr-xr-x 1 root root 6717288 Jul 31 11:16 libmkl_vml_p4n.so > drwxr-xr-x 4 root root 4096 Sep 20 19:19 locale > > There's no compiler dir, maybe you mean this one? > # ll /opt/intel/composerxe/lib/intel64/ > total 124292 > -rwxr-xr-x 1 root root 49691 Jul 31 11:13 cilk_db.so > -rwxr-xr-x 1 root root 10634348 Jul 31 11:13 codecov_libFNP.so > drwxr-xr-x 2 root root 4096 Sep 20 19:17 crt > -rwxr-xr-x 1 root root 1680 Jul 31 11:13 for_main.o > -rwxr-xr-x 1 root root 10634352 Jul 31 11:13 icc_libFNP.so > -rwxr-xr-x 1 root root 10634208 Jul 31 11:13 icpc_libFNP.so > -rwxr-xr-x 1 root root 10634104 Jul 31 11:13 ifort_libFNP.so > -rwxr-xr-x 1 root root 1704 Jul 31 11:13 init.o > drwxr-xr-x 2 root root 4096 Sep 20 19:17 irml > -rwxr-xr-x 1 root root 207532 Jul 31 11:13 libbfp754.a > -rwxr-xr-x 1 root root 30324 Jul 31 11:13 libchkp.so > -rwxr-xr-x 1 root root 71710 Jul 31 11:13 libchkpwrap.a > -rwxr-xr-x 1 root root 60592 Jul 31 11:13 libchkpwrap_w.a > -rwxr-xr-x 1 root root 24 Jul 31 11:13 libcilkrts.so > -rwxr-xr-x 1 root root 299306 Jul 31 11:13 libcilkrts.so.5 > -rwxr-xr-x 1 root root 72736 Jul 31 11:13 > libcomposerxe_boost_date_time_1.34.so > -rwxr-xr-x 1 root root 91864 Jul 31 11:13 > libcomposerxe_boost_filesystem_1.34.so > -rwxr-xr-x 1 root root 820288 Jul 31 11:13 libcomposerxe_boost_regex_1.34.so > -rwxr-xr-x 1 root root 16384 Jul 31 11:13 > libcomposerxe_boost_system_1.34.so > -rwxr-xr-x 1 root root 90528 Jul 31 11:13 > libcomposerxe_boost_thread_1.34.so > -rwxr-xr-x 1 root root 558688 Jul 31 11:13 libcomposerxe_cfgmgr_2.4.so > -rwxr-xr-x 1 root root 229633 Jul 31 11:13 libcomposerxe_clpt_3.1.so > -rwxr-xr-x 1 root root 952504 Jul 31 11:13 libcomposerxe_cpil_2.10.so > -rwxr-xr-x 1 root root 370824 Jul 31 11:13 > libcomposerxe_gen_helpers_core_2.3.so > -rwxr-xr-x 1 root root 311976 Jul 31 11:13 > libcomposerxe_gen_helpers_das_2.3.so > -rwxr-xr-x 1 root root 1354488 Jul 31 11:13 libcomposerxe_libxml_2.7.so > -rwxr-xr-x 1 root root 85384 Jul 31 11:13 libcomposerxe_msngr_cmd_2.4.so > -rwxr-xr-x 1 root root 50312 Jul 31 11:13 libcomposerxe_msngr_reader_2.4.so > -rwxr-xr-x 1 root root 55144 Jul 31 11:13 libcomposerxe_msngr_util_2.4.so > -rwxr-xr-x 1 root root 155568 Jul 31 11:13 libcomposerxe_rdmgr_2.1.so > -rwxr-xr-x 1 root root 4983254 Jul 31 11:13 libdecimal.a > -rwxr-xr-x 1 root root 48120 Jul 31 11:13 libicaf.so > -rwxr-xr-x 1 root root 2067150 Jul 31 11:13 libifcore.a > -rwxr-xr-x 1 root root 2103170 Jul 31 11:13 libifcoremt.a > -rwxr-xr-x 1 root root 1811338 Jul 31 11:13 libifcoremt_pic.a > -rwxr-xr-x 1 root root 26 Jul 31 11:13 libifcoremt.so > -rwxr-xr-x 1 root root 1383688 Jul 31 11:13 libifcoremt.so.5 > -rwxr-xr-x 1 root root 1781918 Jul 31 11:13 libifcore_pic.a > -rwxr-xr-x 1 root root 24 Jul 31 11:13 libifcore.so > -rwxr-xr-x 1 root root 1370356 Jul 31 11:13 libifcore.so.5 > -rwxr-xr-x 1 root root 628904 Jul 31 11:13 libifport.a > -rwxr-xr-x 1 root root 24 Jul 31 11:13 libifport.so > -rwxr-xr-x 1 root root 238534 Jul 31 11:13 libifport.so.5 > -rwxr-xr-x 1 root root 5178356 Jul 31 11:13 libimf.a > -rwxr-xr-x 1 root root 3123213 Jul 31 11:13 libimf.so > -rwxr-xr-x 1 root root 22 Jul 31 11:13 libintlc.so > -rwxr-xr-x 1 root root 381139 Jul 31 11:13 libintlc.so.5 > -rwxr-xr-x 1 root root 1785630 Jul 31 11:13 libiomp5.a > -rwxr-xr-x 1 root root 2399774 Jul 31 11:13 libiomp5.dbg > -rwxr-xr-x 1 root root 1213154 Jul 31 11:13 libiomp5.so > -rwxr-xr-x 1 root root 55778 Jul 31 11:13 libiompstubs5.a > -rwxr-xr-x 1 root root 48020 Jul 31 11:13 libiompstubs5.so > -rwxr-xr-x 1 root root 117948 Jul 31 11:13 libipgo.a > -rwxr-xr-x 1 root root 619096 Jul 31 11:13 libirc.a > -rwxr-xr-x 1 root root 7712 Jul 31 11:13 libirc_s.a > -rwxr-xr-x 1 root root 381139 Jul 31 11:13 libirc.so > -rwxr-xr-x 1 root root 45530 Jul 31 11:13 libirng.a > -rwxr-xr-x 1 root root 33601 Jul 31 11:13 libirng.so > -rwxr-xr-x 1 root root 8632112 Jul 31 11:13 libmatmul.a > -rwxr-xr-x 1 root root 25 Jul 31 11:13 liboffload.so > -rwxr-xr-x 1 root root 228027 Jul 31 11:13 liboffload.so.5 > -rwxr-xr-x 1 root root 227004 Jul 31 11:13 libomp_db.so > -rwxr-xr-x 1 root root 213554 Jul 31 11:13 libpdbx.a > -rwxr-xr-x 1 root root 18256 Jul 31 11:13 libpdbxinst.a > -rwxr-xr-x 1 root root 22 Jul 31 11:13 libpdbx.so > -rwxr-xr-x 1 root root 137571 Jul 31 11:13 libpdbx.so.5 > -rwxr-xr-x 1 root root 17091336 Jul 31 11:13 libsvml.a > -rwxr-xr-x 1 root root 9621938 Jul 31 11:13 libsvml.so > drwxr-xr-x 3 root root 4096 Jul 31 11:17 locale > -rw-r--r-- 1 root root 4288 Jul 31 11:13 ofldbegin.o > -rw-r--r-- 1 root root 1856 Jul 31 11:13 ofldend.o > -rwxr-xr-x 1 root root 10634100 Jul 31 11:13 tselect_libFNP.so > > > -- > > Jure Pečar > http://jure.pecar.org
