Hi Valeriu,
you can always add as many enviroment variables as you need using the
options "modextravars" and "modextrapaths" in your easyconfigs.
I paste here an example but if you grep for "modextra" in your easyconfigs
folder you will find more.
modextravars = {
'TRANSABYSS_PATH': '$root',
'TRANSABYSS_VERSION': version,
'ABYSSPATH': '$EBROOTABYSS/bin',
'PICARD_DIR': '$EBROOTPICARD'
}
modextrapaths = {
'PYTHONPATH': '$root'
}
regards,
Pablo
2014-11-21 14:36 GMT+01:00 Alan O'Cais <[email protected]>:
> Hi Valeriu,
>
> The first question comes up a lot. Yes it is possible but tedious and
> non-trivial at present (and even more difficult in a hierarchical modules).
> If it really is compilers that you would like to keep it will be much
> easier to do a rebuild with EasyBuild than to do wrappers to import the
> existing modules.
>
> For the seocnd question there is actually work started already in there
> for supporting the PRACE CPE environment but it is not in there yet:
> https://github.com/hpcugent/easybuild-easyblocks/issues/82
>
> Alan
>
> On 21 November 2014 14:14, Valeriu Codreanu <[email protected]>
> wrote:
>
>> Hello,
>>
>> I have succeeded in installing EasyBuild on one of our systems. Also, I
>> have built some modules, and am very enthusiastic about it because it makes
>> things a lot easier.
>>
>> However, in order to deploy it on our system I need to know a few extra
>> things:
>>
>> 1. We currently have a lot of software modules already installed. We
>> would prefer if possible to not rebuild every module with EasyBuild, but
>> re-use some of the existing modules (e.g. Intel Compilers) when building
>> other libraries/applications through EasyBuild. Do you have a procedure
>> for
>> achieving this?
>> 2. The generated module files set some classic env vars (e.g.
>> $LD_LIBRARY_PATH) and some EasyBuild specific ones (e.g.
>> $EBROOTGOMPI). Our current module system also sets some other env vars
>> (e.g. PRACE_CFLAGS). What would be the easiest way to instruct EasyBuild
>> to set these extra env vars?
>>
>> Thanks,
>> Vali
>>
>
>
>
> --
> Dr. Alan O'Cais
> Application Support
> Juelich Supercomputing Centre
> Forschungszentrum Juelich GmbH
> 52425 Juelich, Germany
>
> Phone: +49 2461 61 5213
> Fax: +49 2461 61 6656
> E-mail: [email protected]
> WWW: http://www.fz-juelich.de/ias/jsc/EN
>
>
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--
Pablo Escobar López
HPC systems engineer
Biozentrum, University of Basel
Swiss Institute of Bioinformatics SIB
Email: [email protected]
Phone: +41 61 267 21 80
http://www.biozentrum.unibas.ch
