Hello mailinglist, we wanted to use the option "unwanted_env_vars" to remove CXXFLAGS in our easyconfig file. Unfortunately it ignores this option during execution. What are we doing wrong?
Easyconfig file: ----- easyblock = 'MakeCp' name = 'vcflib' version = '1.0.0-rc0' homepage = 'https://github.com/ekg/vcflib' description = """vcflib provides methods to manipulate and interpret sequence variation as it can be described by VCF.""" toolchain = {'name': 'foss', 'version': '2015a'} sources = ['%(name)s-%(version)s.tar.gz'] source_urls = [] dependencies = [('zlib', '1.2.8')] unwanted_env_vars = ['CXXFLAGS'] files_to_copy = [(['bin/vcfregionreduce','bin/vcfindelproximity','bin/vcfvarstats','bin/vcfnosnps','bin/vcfmultiwayscripts','bin/vcfmultiallelic','bin/vcfregionreduce_uncompressed','bin/vcfnoindels','bin/vcfregionreduce_pipe','bin/vcfplotaltdiscrepancy.r','bin/vcfclearinfo','bin/vcfcomplex','bin/vcf2bed.py','bin/vcfsort','bin/bed2region','bin/vcfmultiway','bin/vcfnulldotslashdot','bin/vcfgtcompare.sh','bin/vcfremovenonATGC','bin/vcfplottstv.sh','bin/vcf_strip_extra_headers','bin/vcfplotsitediscrepancy.r','bin/vcfregionreduce_and_cut','bin/vcfnobiallelicsnps','bin/vcfplotaltdiscrepancy.sh','bin/vcfclearid','bin/vcffirstheader','bin/vcfprintaltdiscrepancy.sh','bin/vcfsnps','bin/vcfqualfilter','bin/vcf2sqlite.py','bin/vcfprintaltdiscrepancy.r','bin/plot_roc.r','bin/vcfbiallelic','bin/vcfindels'], 'bin'), 'LICENSE', 'README.md'] sanity_check_paths = { 'files': ['bin/vcfregionreduce','bin/vcfindelproximity','bin/vcfvarstats','bin/vcfnosnps','bin/vcfmultiwayscripts','bin/vcfmultiallelic','bin/vcfregionreduce_uncompressed','bin/vcfnoindels','bin/vcfregionreduce_pipe','bin/vcfplotaltdiscrepancy.r','bin/vcfclearinfo','bin/vcfcomplex','bin/vcf2bed.py','bin/vcfsort','bin/bed2region','bin/vcfmultiway','bin/vcfnulldotslashdot','bin/vcfgtcompare.sh','bin/vcfremovenonATGC','bin/vcfplottstv.sh','bin/vcf_strip_extra_headers','bin/vcfplotsitediscrepancy.r','bin/vcfregionreduce_and_cut','bin/vcfnobiallelicsnps','bin/vcfplotaltdiscrepancy.sh','bin/vcfclearid','bin/vcffirstheader','bin/vcfprintaltdiscrepancy.sh','bin/vcfsnps','bin/vcfqualfilter','bin/vcf2sqlite.py','bin/vcfprintaltdiscrepancy.r','bin/plot_roc.r','bin/vcfbiallelic','bin/vcfindels', 'LICENSE', 'README.md'], 'dirs': [], } moduleclass = 'bio' ----- From log file: ----- == 2015-07-21 15:00:34,131 main.EasyConfig INFO setting config option unwanted_env_vars: value ['CXXFLAGS'] (type: <type 'list'>) == 2015-07-21 15:00:35,188 main.environment INFO Environment variable CXXFLAGS set to -O2 -march=native (previously undefined) ----- Thanks, Oliver
