And here might give you a better idea of the nuanced options: https://github.com/hpcugent/easybuild-framework/blob/d1387c5847ef3e6d4ffe4c3fba2a0eb8e02ebb46/easybuild/tools/toolchain/compiler.py
I think noopt: True will cause the compiler to set -O0, whcih is probably a bit different than opt: False, which probably drops the O2 (but I'm kinda guessing :) ). I think a bunch of people who know better than me are on vacation :) On Tue, Jul 21, 2015 at 9:42 AM Robert Schmidt <[email protected]> wrote: > Actually if you are just trying to disable O2 you probably want something > like: > > toolchainopts = {'opt': False} > > I'm not sure how well documented it is... I found it here: > > > https://hpcugent.github.io/easybuild/files/EasyBuild_introduction_hackathon-Vienna-Jun14.pdf > > > > On Tue, Jul 21, 2015 at 9:33 AM Robert Schmidt <[email protected]> wrote: > >> Yeah I don't think that applies to compiler environment variables >> unfortunately. >> >> The best I can find is onlytcmod >> >> onlymod: Boolean/string to indicate if the toolchain should only load the >> environment >> with module (True) or also set all other variables (False) like >> compiler CC etc >> (If string: comma separated list of variables that will be >> ignored). >> >> https://easybuild.readthedocs.org/en/latest/eb_a.html >> >> >> >> On Tue, Jul 21, 2015 at 9:10 AM Stolpe, Oliver <[email protected]> >> wrote: >> >>> Hello mailinglist, >>> >>> we wanted to use the option "unwanted_env_vars" to remove CXXFLAGS in >>> our easyconfig file. Unfortunately it ignores this option during execution. >>> What are we doing wrong? >>> >>> Easyconfig file: >>> ----- >>> easyblock = 'MakeCp' >>> >>> name = 'vcflib' >>> version = '1.0.0-rc0' >>> >>> homepage = 'https://github.com/ekg/vcflib' >>> description = """vcflib provides methods to manipulate and interpret >>> sequence variation as it can be described by VCF.""" >>> >>> toolchain = {'name': 'foss', 'version': '2015a'} >>> >>> sources = ['%(name)s-%(version)s.tar.gz'] >>> source_urls = [] >>> >>> dependencies = [('zlib', '1.2.8')] >>> >>> unwanted_env_vars = ['CXXFLAGS'] >>> >>> files_to_copy = >>> [(['bin/vcfregionreduce','bin/vcfindelproximity','bin/vcfvarstats','bin/vcfnosnps','bin/vcfmultiwayscripts','bin/vcfmultiallelic','bin/vcfregionreduce_uncompressed','bin/vcfnoindels','bin/vcfregionreduce_pipe','bin/vcfplotaltdiscrepancy.r','bin/vcfclearinfo','bin/vcfcomplex','bin/vcf2bed.py','bin/vcfsort','bin/bed2region','bin/vcfmultiway','bin/vcfnulldotslashdot','bin/vcfgtcompare.sh','bin/vcfremovenonATGC','bin/vcfplottstv.sh','bin/vcf_strip_extra_headers','bin/vcfplotsitediscrepancy.r','bin/vcfregionreduce_and_cut','bin/vcfnobiallelicsnps','bin/vcfplotaltdiscrepancy.sh','bin/vcfclearid','bin/vcffirstheader','bin/vcfprintaltdiscrepancy.sh','bin/vcfsnps','bin/vcfqualfilter','bin/vcf2sqlite.py','bin/vcfprintaltdiscrepancy.r','bin/plot_roc.r','bin/vcfbiallelic','bin/vcfindels'], >>> 'bin'), 'LICENSE', 'README.md'] >>> >>> sanity_check_paths = { >>> 'files': >>> ['bin/vcfregionreduce','bin/vcfindelproximity','bin/vcfvarstats','bin/vcfnosnps','bin/vcfmultiwayscripts','bin/vcfmultiallelic','bin/vcfregionreduce_uncompressed','bin/vcfnoindels','bin/vcfregionreduce_pipe','bin/vcfplotaltdiscrepancy.r','bin/vcfclearinfo','bin/vcfcomplex','bin/vcf2bed.py','bin/vcfsort','bin/bed2region','bin/vcfmultiway','bin/vcfnulldotslashdot','bin/vcfgtcompare.sh','bin/vcfremovenonATGC','bin/vcfplottstv.sh','bin/vcf_strip_extra_headers','bin/vcfplotsitediscrepancy.r','bin/vcfregionreduce_and_cut','bin/vcfnobiallelicsnps','bin/vcfplotaltdiscrepancy.sh','bin/vcfclearid','bin/vcffirstheader','bin/vcfprintaltdiscrepancy.sh','bin/vcfsnps','bin/vcfqualfilter','bin/vcf2sqlite.py','bin/vcfprintaltdiscrepancy.r','bin/plot_roc.r','bin/vcfbiallelic','bin/vcfindels', >>> 'LICENSE', 'README.md'], >>> 'dirs': [], >>> } >>> >>> moduleclass = 'bio' >>> ----- >>> >>> From log file: >>> ----- >>> == 2015-07-21 15:00:34,131 main.EasyConfig INFO setting config option >>> unwanted_env_vars: value ['CXXFLAGS'] (type: <type 'list'>) >>> == 2015-07-21 15:00:35,188 main.environment INFO Environment variable >>> CXXFLAGS set to -O2 -march=native (previously undefined) >>> ----- >>> >>> Thanks, >>> Oliver >>> >>
