Hello, Thanks for reporting this. We missed a skip check for the yaml module. The bugfix can be found in: https://github.com/hpcugent/easybuild-framework/pull/1525
Ward On 18-12-15 18:15, Joachim Hein wrote: > Hi, > > I am seeing the same, > see https://github.com/hpcugent/easybuild-framework/issues/1524 for a > full report. > > Best wishes > Joachim > >> On 18 Dec 2015, at 15:43, Pieter Neerincx <[email protected] >> <mailto:[email protected]>> wrote: >> >> Hi Kenneth, >> >> Thanks for the greatest! I'm running into what appear to be a small >> problem when running the tests. Output ends with: >> >> ........................Skipping test_parse_yeb (no PyYAML available) >> .E.Skipping test_join (no PyYAML available) >> .Skipping test_parse_yeb (no PyYAML available) >> . >> ====================================================================== >> ERROR: Test specifying external (build) dependencies. >> ---------------------------------------------------------------------- >> Traceback (most recent call last): >> File >> "/apps/software/EasyBuild/2.5.0/lib/python2.6/site-packages/easybuild_framework-2.5.0-py2.6.egg/test/framework/yeb.py", >> line 166, in test_external_module_toolchain >> ec = EasyConfig(ecpath) >> File >> "/apps/software/EasyBuild/2.5.0/lib/python2.6/site-packages/easybuild_framework-2.5.0-py2.6.egg/easybuild/framework/easyconfig/easyconfig.py", >> line 186, in __init__ >> auto_convert_value_types=auto_convert_value_types) >> File >> "/apps/software/EasyBuild/2.5.0/lib/python2.6/site-packages/easybuild_framework-2.5.0-py2.6.egg/easybuild/framework/easyconfig/parser.py", >> line 105, in __init__ >> self._set_formatter(filename) >> File >> "/apps/software/EasyBuild/2.5.0/lib/python2.6/site-packages/easybuild_framework-2.5.0-py2.6.egg/easybuild/framework/easyconfig/parser.py", >> line 196, in _set_formatter >> self._formatter.parse(self.rawcontent) >> File >> "/apps/software/EasyBuild/2.5.0/lib/python2.6/site-packages/easybuild_framework-2.5.0-py2.6.egg/easybuild/tools/utilities.py", >> line 145, in error >> raise ImportError(msg) >> ImportError: No module named yaml; required module 'yaml' is not available >> >> ---------------------------------------------------------------------- >> Ran 372 tests in 955.352s >> >> FAILED (errors=1) >> ERROR: Not all tests were successful. >> >> Looks like at first EB correctly detects a YAML module is missing and >> skips some tests, but afterwards fails on the same missing YAML module... >> >> Cheers, >> >> Pi >> >>> On Dec 17, 2015, at 15:51, Kenneth Hoste <[email protected] >>> <mailto:[email protected]>> wrote: >>> >>> Dear EasyBuilders, >>> >>> I'm happy to announce the release of EasyBuild version 2.5.0 [1], the >>> greatest EasyBuild version up until now. Honestly. >>> >>> This release features: >>> >>> * support for installing the latest versions of several of the >>> Intel tools (thanks Fokko, Lumìr, Ward!), including: >>> * install the 2016 versions of the Intel C/C++/Fortran compilers >>> * support to specify components to install (to keep the >>> installations 'slim') >>> >>> * support for compiling with generic optimization via >>> --optarch=GENERIC (thanks Pablo!) [2] >>> >>> * support for using GCCcore as a base underneath all toolchain >>> compilers, which is sort of a replacement for the GNU toolchain >>> (thanks Alan!) >>> >>> * support for listing build dependencies as hidden dependencies >>> >>> * initial support for using the IBM XL compilers in compiler >>> toolchains (thanks Jack!) >>> >>> * improved (but still experimental) support for easyconfig files >>> in YAML format, a.k.a. .yeb easyconfigs (thanks Caroline!) >>> >>> * added support for installing 39 new software packages, next to >>> updates for already supported software (incl. Python 2.7.11, OpenFOAM >>> 3.0.0, OpenFOAM-Extend 3.2, ...) >>> >>> ... and various other enhancements and bug fixes. >>> Additionally, packaging support [3] is no longer considered >>> experimental, but stable. >>> >>> More details are available in the release notes [4]. >>> >>> Thanks to everyone who contributed to this release in one way or >>> another! >>> >>> >>> To upgrade to EasyBuild v2.5.0, there are several options: >>> >>> (i) (re)bootstrap EasyBuild to obtain an EasyBuild/2.5.0 module to >>> load [5] >>> >>> (ii) install EasyBuild v2.5.0 with a previous version of >>> EasyBuild, using the easyconfig file available in [6] >>> >>> (iii) install EasyBuild v2.5.0 from PyPI, using one of the >>> standard Python installation tools (easy_install, pip, ...) >>> >>> (iv) update your Git working copies of the different EasyBuild >>> repositories >>> >>> >>> Enjoy! >>> >>> regards, >>> >>> Kenneth >>> EasyBuild release manager >>> >>> [1] http://pypi.python.org/pypi/easybuild >>> [2] >>> http://easybuild.readthedocs.org/en/latest/Controlling_compiler_optimization_flags.html >>> [3] http://easybuild.readthedocs.org/en/latest/Packaging_support.html >>> [4] http://easybuild.readthedocs.org/en/latest/Release_notes.html >>> [5] >>> http://easybuild.readthedocs.org/en/latest/Installation.html#bootstrapping-easybuild >>> [6] https://github.com/hpcugent/easybuild-easyconfigs/pull/2238 >>> >> >> ------------------------------------------------------------- >> phone: +31 6 143 66 783 >> e-mail: [email protected] <mailto:[email protected]> >> skype: pieter.online >> ------------------------------------------------------------- >> > -- dr. ir. Ward Poelmans High Performance Computing infrastructure unit Ghent University Krijgslaan 281 S9 B-9000 Gent Belgium Tel: +32 9 264 4817 http://www.ugent.be/hpc
