Thanks for looking into this Ward! Pieter, Joachim: this failing test is safe to ignore, it only means we forgot the 'skip if PyYAML is not available' in one of the tests.
regards, Kenneth > On 18 Dec 2015, at 20:49, Ward Poelmans <[email protected]> wrote: > > Hello, > > Thanks for reporting this. We missed a skip check for the yaml module. > The bugfix can be found in: > https://github.com/hpcugent/easybuild-framework/pull/1525 > > Ward > >> On 18-12-15 18:15, Joachim Hein wrote: >> Hi, >> >> I am seeing the same, >> see https://github.com/hpcugent/easybuild-framework/issues/1524 for a >> full report. >> >> Best wishes >> Joachim >> >>> On 18 Dec 2015, at 15:43, Pieter Neerincx <[email protected] >>> <mailto:[email protected]>> wrote: >>> >>> Hi Kenneth, >>> >>> Thanks for the greatest! I'm running into what appear to be a small >>> problem when running the tests. Output ends with: >>> >>> ........................Skipping test_parse_yeb (no PyYAML available) >>> .E.Skipping test_join (no PyYAML available) >>> .Skipping test_parse_yeb (no PyYAML available) >>> . >>> ====================================================================== >>> ERROR: Test specifying external (build) dependencies. >>> ---------------------------------------------------------------------- >>> Traceback (most recent call last): >>> File >>> "/apps/software/EasyBuild/2.5.0/lib/python2.6/site-packages/easybuild_framework-2.5.0-py2.6.egg/test/framework/yeb.py", >>> line 166, in test_external_module_toolchain >>> ec = EasyConfig(ecpath) >>> File >>> "/apps/software/EasyBuild/2.5.0/lib/python2.6/site-packages/easybuild_framework-2.5.0-py2.6.egg/easybuild/framework/easyconfig/easyconfig.py", >>> line 186, in __init__ >>> auto_convert_value_types=auto_convert_value_types) >>> File >>> "/apps/software/EasyBuild/2.5.0/lib/python2.6/site-packages/easybuild_framework-2.5.0-py2.6.egg/easybuild/framework/easyconfig/parser.py", >>> line 105, in __init__ >>> self._set_formatter(filename) >>> File >>> "/apps/software/EasyBuild/2.5.0/lib/python2.6/site-packages/easybuild_framework-2.5.0-py2.6.egg/easybuild/framework/easyconfig/parser.py", >>> line 196, in _set_formatter >>> self._formatter.parse(self.rawcontent) >>> File >>> "/apps/software/EasyBuild/2.5.0/lib/python2.6/site-packages/easybuild_framework-2.5.0-py2.6.egg/easybuild/tools/utilities.py", >>> line 145, in error >>> raise ImportError(msg) >>> ImportError: No module named yaml; required module 'yaml' is not available >>> >>> ---------------------------------------------------------------------- >>> Ran 372 tests in 955.352s >>> >>> FAILED (errors=1) >>> ERROR: Not all tests were successful. >>> >>> Looks like at first EB correctly detects a YAML module is missing and >>> skips some tests, but afterwards fails on the same missing YAML module... >>> >>> Cheers, >>> >>> Pi >>> >>>> On Dec 17, 2015, at 15:51, Kenneth Hoste <[email protected] >>>> <mailto:[email protected]>> wrote: >>>> >>>> Dear EasyBuilders, >>>> >>>> I'm happy to announce the release of EasyBuild version 2.5.0 [1], the >>>> greatest EasyBuild version up until now. Honestly. >>>> >>>> This release features: >>>> >>>> * support for installing the latest versions of several of the >>>> Intel tools (thanks Fokko, Lumìr, Ward!), including: >>>> * install the 2016 versions of the Intel C/C++/Fortran compilers >>>> * support to specify components to install (to keep the >>>> installations 'slim') >>>> >>>> * support for compiling with generic optimization via >>>> --optarch=GENERIC (thanks Pablo!) [2] >>>> >>>> * support for using GCCcore as a base underneath all toolchain >>>> compilers, which is sort of a replacement for the GNU toolchain >>>> (thanks Alan!) >>>> >>>> * support for listing build dependencies as hidden dependencies >>>> >>>> * initial support for using the IBM XL compilers in compiler >>>> toolchains (thanks Jack!) >>>> >>>> * improved (but still experimental) support for easyconfig files >>>> in YAML format, a.k.a. .yeb easyconfigs (thanks Caroline!) >>>> >>>> * added support for installing 39 new software packages, next to >>>> updates for already supported software (incl. Python 2.7.11, OpenFOAM >>>> 3.0.0, OpenFOAM-Extend 3.2, ...) >>>> >>>> ... and various other enhancements and bug fixes. >>>> Additionally, packaging support [3] is no longer considered >>>> experimental, but stable. >>>> >>>> More details are available in the release notes [4]. >>>> >>>> Thanks to everyone who contributed to this release in one way or >>>> another! >>>> >>>> >>>> To upgrade to EasyBuild v2.5.0, there are several options: >>>> >>>> (i) (re)bootstrap EasyBuild to obtain an EasyBuild/2.5.0 module to >>>> load [5] >>>> >>>> (ii) install EasyBuild v2.5.0 with a previous version of >>>> EasyBuild, using the easyconfig file available in [6] >>>> >>>> (iii) install EasyBuild v2.5.0 from PyPI, using one of the >>>> standard Python installation tools (easy_install, pip, ...) >>>> >>>> (iv) update your Git working copies of the different EasyBuild >>>> repositories >>>> >>>> >>>> Enjoy! >>>> >>>> regards, >>>> >>>> Kenneth >>>> EasyBuild release manager >>>> >>>> [1] http://pypi.python.org/pypi/easybuild >>>> [2] >>>> http://easybuild.readthedocs.org/en/latest/Controlling_compiler_optimization_flags.html >>>> [3] http://easybuild.readthedocs.org/en/latest/Packaging_support.html >>>> [4] http://easybuild.readthedocs.org/en/latest/Release_notes.html >>>> [5] >>>> http://easybuild.readthedocs.org/en/latest/Installation.html#bootstrapping-easybuild >>>> [6] https://github.com/hpcugent/easybuild-easyconfigs/pull/2238 >>> >>> ------------------------------------------------------------- >>> phone: +31 6 143 66 783 >>> e-mail: [email protected] <mailto:[email protected]> >>> skype: pieter.online >>> ------------------------------------------------------------- > > > -- > dr. ir. Ward Poelmans > High Performance Computing infrastructure unit > Ghent University > Krijgslaan 281 S9 > B-9000 Gent > Belgium > Tel: +32 9 264 4817 > http://www.ugent.be/hpc
