Thanks that worked!
On Mon, Feb 22, 2016 at 11:08 PM, Jack Perdue <[email protected]> wrote: > Howdy Niek, > > Try this: > > 1) add the line > > options = {'modulename': 'vcf'} > > 2) remove your "sanity_check_commands" line. > By default, the PythonPackage easyblock will > try to import it (using the name above) during > sanity checking > > See Biopython (among others) for an example. > > Jack Perdue > Lead Systems Administrator > High Performance Research Computing > TAMU Division of Research > [email protected] http://sc.tamu.edu > SC Helpdesk: [email protected] > > > On 02/22/2016 03:53 PM, Niek de Klein wrote: >> >> Hi alI, >> >> I am trying to install PyVCF >> (https://pypi.python.org/pypi/PyVCF/0.6.7) which is imported with >> >> import vcf >> >> instead of >> >> import pyvcf >> >> The problem I have is that when I use >> >> sanity_check_commands = [('python', '-c "import vcf"')] >> >> the easyblock PythonPackage still uses >> >> python -c "import pyvcf" >> >> as sanity command as well. >> >> I could only find an open issue >> (https://github.com/hpcugent/easybuild-easyconfigs/issues/1205) >> regarding this, anyone know how I can work around this? >> >> Cheers, >> Niek > >
