Hi Satish, Did you have modules loaded in your environment when you ran the successful manual test? If so, which ones (`module list`)?
Alan On 30 January 2017 at 16:03, Satish Sherikar <[email protected]<mailto:[email protected]>> wrote: Hi, I dont understand where it is coming from. I have manually configured HDF5 with same command as used by easybuild while configuration. But at this time it ran successfully. By using eb command only it is giving me an error. If you required any other data i'll provide you. I have attached config.log of manual configuration with same configuration command. And can you please provide me how to create my own/dummy toolchain for this cluster. ( Preffered intel toolchain) Regards, Satish On Mon, Jan 30, 2017 at 6:19 PM, Robert Schmidt <[email protected]<mailto:[email protected]>> wrote: libbat.so is part of LSF. It is probably included somewhere in the environment. It is pretty "messy" so perhaps there is an LD_LIBRARY_PATH that was set before easybuild took over that normally handled making sure it is available? On Mon, Jan 30, 2017 at 7:48 AM Ward Poelmans <[email protected]<mailto:[email protected]>> wrote: Hi Satish, On Mon, Jan 30, 2017 at 1:36 PM, Satish Sherikar <[email protected]<mailto:[email protected]>> wrote: > Hi Ward, > > I have attached config.log for HDF5. > > We are using mpiicc, mpiifort and mpiif90 in our cluster. But it is taking > FC=mpif90. > > I didnt understand how to change all these. You are building HDF5 with the `goolf` toolchain. This combines GCC with OpenMPI and that's the reason why EB is using mpif90. If you want to use the intel compilers, you must use the `intel` toolchain. I see both have it in your PATH already. EB cannot use this directly: it wants a intel installation done by EB itself. The HDF5 configure scripts fails because of: configure:4476: mpicc -o conftest -O2 -march=native -fPIC -I/gpfs1/home/ibm/.local/easybuild/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/include -I/gpfs1/home/ibm/.local/easybuild/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2 .6-LAPACK-3.4.2/include -I/gpfs1/home/ibm/.local/easybuild/software/FFTW/3.3.3-gompi-1.4.10/include -I/gpfs1/home/ibm/.local/easybuild/software/zlib/1.2.7-goolf-1.4.10/include -I/gpfs1/home/ibm/.local/easybuild/software/Szip/2.1-goolf-1.4 .10/include -L/gpfs1/home/ibm/.local/easybuild/software/GCC/4.7.2/lib64 -L/gpfs1/home/ibm/.local/easybuild/software/GCC/4.7.2/lib -L/gpfs1/home/ibm/.local/easybuild/software/OpenBLAS/0.2.6-gompi-1.4.10-LAPACK-3.4.2/lib -L/gpfs1/home/ibm/ .local/easybuild/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenBLAS-0.2.6-LAPACK-3.4.2/lib -L/gpfs1/home/ibm/.local/easybuild/software/FFTW/3.3.3-gompi-1.4.10/lib -L/gpfs1/home/ibm/.local/easybuild/software/zlib/1.2.7-goolf-1.4.10/lib -L/gpfs 1/home/ibm/.local/easybuild/software/Szip/2.1-goolf-1.4.10/lib conftest.c -lm -lpthread >&5 configure:4480: $? = 0 configure:4487: ./conftest ./conftest: error while loading shared libraries: libbat.so: cannot open shared object file: No such file or directory I've never heard of `libbat.so` and it doesn't get linked in. Any idea where it comes from? Ward -- Dr. Alan O'Cais E-CAM Software Manager Juelich Supercomputing Centre Forschungszentrum Juelich GmbH 52425 Juelich, Germany Phone: +49 2461 61 5213 Fax: +49 2461 61 6656 E-mail: [email protected]<mailto:[email protected]> WWW: http://www.fz-juelich.de/ias/jsc/EN ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------ Forschungszentrum Juelich GmbH 52425 Juelich Sitz der Gesellschaft: Juelich Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Dr. Karl Eugen Huthmacher Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender), Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt, Prof. Dr. Sebastian M. Schmidt ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------
