Hi, Result of module li command.
iitmlogin5:/gpfs1/home/ibm/.local/easybuild/build/HDF5/1.8.7/goolf-1.4.10/hdf5-1.8.7 $ module li No Modulefiles Currently Loaded. Regards, Satish On Mon, Jan 30, 2017 at 10:03 PM, Alan O'Cais <[email protected]> wrote: > Hi Satish, > > Did you have modules loaded in your environment when you ran the > successful manual test? If so, which ones (`module list`)? > > Alan > > On 30 January 2017 at 16:03, Satish Sherikar <[email protected]> > wrote: > >> Hi, >> >> I dont understand where it is coming from. I have manually configured >> HDF5 with same command as used by easybuild while configuration. But at >> this time it ran successfully. By using eb command only it is giving me an >> error. >> >> If you required any other data i'll provide you. >> >> I have attached config.log of manual configuration with same >> configuration command. >> >> And can you please provide me how to create my own/dummy toolchain for >> this cluster. ( Preffered intel toolchain) >> >> Regards, >> Satish >> >> On Mon, Jan 30, 2017 at 6:19 PM, Robert Schmidt <[email protected]> >> wrote: >> >>> libbat.so is part of LSF. It is probably included somewhere in the >>> environment. It is pretty "messy" so perhaps there is an LD_LIBRARY_PATH >>> that was set before easybuild took over that normally handled making sure >>> it is available? >>> >>> On Mon, Jan 30, 2017 at 7:48 AM Ward Poelmans <[email protected]> >>> wrote: >>> >>>> Hi Satish, >>>> >>>> On Mon, Jan 30, 2017 at 1:36 PM, Satish Sherikar < >>>> [email protected]> wrote: >>>> > Hi Ward, >>>> > >>>> > I have attached config.log for HDF5. >>>> > >>>> > We are using mpiicc, mpiifort and mpiif90 in our cluster. But it is >>>> taking >>>> > FC=mpif90. >>>> > >>>> > I didnt understand how to change all these. >>>> >>>> You are building HDF5 with the `goolf` toolchain. This combines GCC >>>> with OpenMPI and that's the reason why EB is using mpif90. >>>> >>>> If you want to use the intel compilers, you must use the `intel` >>>> toolchain. I see both have it in your PATH already. EB cannot use this >>>> directly: it wants a intel installation done by EB itself. >>>> >>>> >>>> The HDF5 configure scripts fails because of: >>>> configure:4476: mpicc -o conftest -O2 -march=native -fPIC >>>> -I/gpfs1/home/ibm/.local/easybuild/software/OpenBLAS/0.2.6-g >>>> ompi-1.4.10-LAPACK-3.4.2/include >>>> -I/gpfs1/home/ibm/.local/easybuild/software/ScaLAPACK/2.0.2- >>>> gompi-1.4.10-OpenBLAS-0.2 >>>> .6-LAPACK-3.4.2/include >>>> -I/gpfs1/home/ibm/.local/easybuild/software/FFTW/3.3.3-gompi >>>> -1.4.10/include >>>> -I/gpfs1/home/ibm/.local/easybuild/software/zlib/1.2.7-goolf >>>> -1.4.10/include >>>> -I/gpfs1/home/ibm/.local/easybuild/software/Szip/2.1-goolf-1.4 >>>> .10/include -L/gpfs1/home/ibm/.local/easyb >>>> uild/software/GCC/4.7.2/lib64 >>>> -L/gpfs1/home/ibm/.local/easybuild/software/GCC/4.7.2/lib >>>> -L/gpfs1/home/ibm/.local/easybuild/software/OpenBLAS/0.2.6-g >>>> ompi-1.4.10-LAPACK-3.4.2/lib >>>> -L/gpfs1/home/ibm/ >>>> .local/easybuild/software/ScaLAPACK/2.0.2-gompi-1.4.10-OpenB >>>> LAS-0.2.6-LAPACK-3.4.2/lib >>>> -L/gpfs1/home/ibm/.local/easybuild/software/FFTW/3.3.3-gompi-1.4.10/lib >>>> -L/gpfs1/home/ibm/.local/easybuild/software/zlib/1.2.7-goolf-1.4.10/lib >>>> -L/gpfs >>>> 1/home/ibm/.local/easybuild/software/Szip/2.1-goolf-1.4.10/lib >>>> conftest.c -lm -lpthread >&5 >>>> configure:4480: $? = 0 >>>> configure:4487: ./conftest >>>> ./conftest: error while loading shared libraries: libbat.so: cannot >>>> open shared object file: No such file or directory >>>> >>>> >>>> I've never heard of `libbat.so` and it doesn't get linked in. Any idea >>>> where it comes from? >>>> >>>> Ward >>>> >>> >> > > > -- > Dr. Alan O'Cais > E-CAM Software Manager > Juelich Supercomputing Centre > Forschungszentrum Juelich GmbH > 52425 Juelich, Germany > > Phone: +49 2461 61 5213 > Fax: +49 2461 61 6656 > E-mail: [email protected] > WWW: http://www.fz-juelich.de/ias/jsc/EN > > > ------------------------------------------------------------ > ------------------------------------ > ------------------------------------------------------------ > ------------------------------------ > Forschungszentrum Juelich GmbH > 52425 Juelich > Sitz der Gesellschaft: Juelich > Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 > Vorsitzender des Aufsichtsrats: MinDir Dr. Karl Eugen Huthmacher > Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender), > Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt, > Prof. Dr. Sebastian M. Schmidt > ------------------------------------------------------------ > ------------------------------------ > ------------------------------------------------------------ > ------------------------------------ > >
