Hi all,
The problem manifests itself only when both i) an old version of
setuptools is active, ii) the eb command is not available via $PATH
anywhere (which explains why this went undetected...).
More details are available in
https://github.com/easybuilders/easybuild-framework/issues/2279#issuecomment-321053120.
An update to the bootstrap script to fix the problem has just been
merged via https://github.com/easybuilders/easybuild-framework/pull/2281.
Clyde: please download the latest version of the bootstrap script
(20170808.01), and verify that it works as expected now?
A companion fix to deal with the oversight that introduced the problem
is proposed at
https://github.com/easybuilders/easybuild-framework/pull/2282, but this
will only take effect after the next EasyBuild release (if merged).
regards,
Kenneth
On 08/08/2017 21:50, Carlos Fenoy wrote:
Hi Kenneth,
I was able to reproduce this running in a docker container (with
shifter) using the centos image. It seems to be an issue with the
included distribute package.
Regards,
Carlos
On Tue, 8 Aug 2017, 21:25 Clyde Jones, <[email protected]
<mailto:[email protected]>> wrote:
Hi
I *think* it might have to do with the versions of vsc-install
and vsc-base. I tried using the 3.3.0 sources and build failed
until I deleted the vsc-install and vsc-base.
On Tue, Aug 8, 2017 at 11:48 AM, Kenneth Hoste
<[email protected] <mailto:[email protected]>> wrote:
Dear Clyde,
Others have reported this problem too, it seems like some
change in EasyBuild v3.3.1 is triggering this problem.
We're still trying to figure out what is wrong exactly,
follow-up in
https://github.com/easybuilders/easybuild-framework/issues/2279 .
In the mean time, I'd suggest to try and install EasyBuild
v3.3.1 using "eb --install-latest-eb-release" instead.
regards,
Kenneth
On 22/07/2017 00:22, Clyde Jones wrote:
Hi
I've been trying to install easybuild using the bootstrap
script and I am getting the following errors. It looks like
there is a configuration option that the script is expecting
but is not getting set. This fails on Centos7 (7.3) and
Ubuntu 16.04
What should I be setting? This worked properly for 3.3.0
$ env | sort
APPS_PREFIX=/gstore/apps
BASH_ENV=/gstore/apps/lmod/lmod/init/bash
BASH_FUNC_ml()=() { eval $($LMOD_DIR/ml_cmd "$@")
BASH_FUNC_module()=() { eval $($LMOD_CMD bash "$@") && eval
$(${LMOD_SETTARG_CMD:-:} -s sh)
EASYBUILD_PREFIX=/gstore/apps
EASYBUILD_ROBOT_PATHS=/home/gredsys/packages/
HOME=/home/gredsys
HOSTNAME=704ff3bc58b2
LESSOPEN=||/usr/bin/lesspipe.sh %s
LMOD_CMD=/gstore/apps/lmod/lmod/libexec/lmod
LMOD_DIR=/gstore/apps/lmod/lmod/libexec
LMOD_FULL_SETTARG_SUPPORT=no
LMOD_PKG=/gstore/apps/lmod/lmod
LMOD_SETTARG_CMD=:
LMOD_VERSION=7.5.15
LMOD_sys=Linux
LUAROCKS_PREFIX=/gstore/apps/luarocks/2.4.2
LUAROCKS_VER=2.4.2
LUA_CPATH=/gstore/apps/luarocks/2.4.2/lib/lua/5.1/?.so;;
LUA_PATH=/gstore/apps/luarocks/2.4.2/share/lua/5.1/?.lua;/gstore/apps/luarocks/2.4.2/share/lua/5.1/?/init.lua;;
LUA_VER=5.1.4
MANPATH=/gstore/apps/lmod/lmod/share/man::
MODULEPATH=/gstore/apps/modules::/gstore/apps/modulefiles:/gstore/apps/modulefiles/all:/gstore/apps/lmod/lmod/modulefiles/Core
MODULEPATH_ROOT=/gstore/apps/modulefiles
MODULESHOME=/gstore/apps/lmod/lmod
PATH=/tmp/tmpNM6MoY/bin:/tmp/tmpNM6MoY/lib:/tmp/tmpNM6MoY/lib64:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/gstore/apps/luarocks/2.4.2/bin/:/gstore/apps/luarocks/2.4.2/lib/:/gstore/apps/luarocks/2.4.2/bin/:/gstore/apps/luarocks/2.4.2/lib/:/gstore/apps/luarocks/2.4.2/bin/:/gstore/apps/luarocks/2.4.2/lib/
PWD=/tmp/tmpNM6MoY/eb_stage1/lib/python2.7/site-packages
PYTHONPATH=/tmp/tmpNM6MoY/lib/python2.7/site-packages/:/tmp/tmpNM6MoY/lib/python2.7/site-packages/distribute-0.6.49-py2.7.egg:
SHLVL=1
TERM=xterm
USER=
_=/usr/bin/env
_ModuleTable001_=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
_ModuleTable002_=b3JlIix9
_ModuleTable_Sz_=2
}
}
[gredsys@704ff3bc58b2 tmp]$ python bootstrap_eb.py $APPS_PREFIX
[[INFO]] EasyBuild bootstrap script (version 20170706.01,
MD5: e3595314c419ce935a5caaf70032801e)
[[INFO]] Found Python 2.7.5 (default, Nov 6 2016, 00:28:07)
; [GCC 4.8.5 20150623 (Red Hat 4.8.5-11)]
[[INFO]] Installation prefix /gstore/apps
[[INFO]] Found module command
'/gstore/apps/lmod/lmod/libexec/lmod' via $LMOD_CMD (Lmod),
so using it.
[[INFO]] No suitable setuptools installation found,
proceeding with stage 0...
[[INFO]] +++ STAGE 0: installing distribute via included
(patched) distribute_setup.py...
Downloading
https://easybuilders.github.io/easybuild/files/distribute-0.6.49-patched1.tar.gz
Extracting in /tmp/tmpoIozZ7
Now working in /tmp/tmpoIozZ7/distribute-0.6.49
Installing Distribute
[[INFO]] Installed setuptools version 0.6
(/tmp/tmpNM6MoY/lib/python2.7/site-packages/distribute-0.6.49-py2.7.egg/setuptools/__init__.pyc)
[[INFO]] +++ STAGE 1: installing EasyBuild in temporary dir
with easy_install...
[[INFO]] installing EasyBuild with 'easy_install --quiet
--upgrade --prefix=/tmp/tmpNM6MoY/eb_stage1 easybuild'
[[INFO]] running post install command 'easy_install --upgrade
--prefix=/tmp/tmpNM6MoY/eb_stage1 vsc-base'
[[INFO]] +++ STAGE 2: installing EasyBuild in /gstore/apps
with EasyBuild from stage 1...
Traceback (most recent call last):
File "bootstrap_eb.py", line 1014, in <module>
main()
File "bootstrap_eb.py", line 817, in main
stage2(tmpdir, templates, install_path, distribute_egg_dir,
sourcepath)
File "bootstrap_eb.py", line 687, in stage2
easybuild_main()
File
"/tmp/tmpNM6MoY/eb_stage1/lib/python2.7/site-packages/easybuild_framework-3.3.1-py2.7.egg/easybuild/main.py",
line 189, in main
eb_go = eboptions.parse_options(args=args)
File
"/tmp/tmpNM6MoY/eb_stage1/lib/python2.7/site-packages/easybuild_framework-3.3.1-py2.7.egg/easybuild/tools/options.py",
line 1061, in parse_options
raise EasyBuildError("Failed to parse configuration options:
%s" % err)
easybuild.tools.build_log.EasyBuildError: "Failed to parse
configuration options: 'NoneType' object has no attribute
'startswith'"
--
Clyde Jones
| gRED Sr IT Engineer
| 650-270-0968 <tel:%28650%29%20270-0968>
--
Clyde Jones
| gRED Sr IT Engineer
| 650-270-0968
