The error in this log is
One or more OS dependencies were not found: [('openssl-devel',
'libssl-dev', 'libopenssl-devel')]
which is the same as the first error, did you undo the change you made to
the image you use?On 16 Nov 2017 18:03, "Mr. Joseph John" <[email protected]> wrote: > Hi, > Unfortunately, the entire log file is 23MB. I am including the parts > of the log, I am assuming, is relevant : > > == 2017-11-16 06:23:24,532 easyconfig.py:907 DEBUG Using subtoolchain > {'version': '2017a', 'name': 'intel'} for dep ncurses 6.0 > == 2017-11-16 06:23:24,532 easyconfig.py:916 DEBUG Figured out toolchain > to use for dep ncurses 6.0: {'version': '2017a', 'name': 'intel'} > == 2017-11-16 06:23:24,532 easyconfig.py:1704 DEBUG Determining short > module name for {'external_module_metadata': {}, 'full_mod_name': None, > 'toolchain': {'version': '2017a', 'name': 'intel'}, 'name': 'ncurses', > 'dummy': False, 'short_mod_name': None, 'external_module': False, > 'versionsuffix': '', 'version': '6.0', 'toolchain_inherited': True, > 'hidden': False, 'build_only': False} (force_visible: False) > == 2017-11-16 06:23:24,533 easyconfig.py:1656 DEBUG No alternative > software name specified to determine module name with > == 2017-11-16 06:23:24,533 utilities.py:103 DEBUG Module name > ncurses/6.0-intel-2017a validated > == 2017-11-16 06:23:24,533 easyconfig.py:1706 DEBUG Obtained valid short > module name ncurses/6.0-intel-2017a > == 2017-11-16 06:23:24,533 easyconfig.py:1676 DEBUG Determining full > module name for {'external_module_metadata': {}, 'full_mod_name': None, > 'toolchain': {'version': '2017a', 'name': 'intel'}, 'name': 'ncurses', > 'dummy': False, 'short_mod_name': None, 'external_module': False, > 'versionsuffix': '', 'version': '6.0', 'toolchain_inherited': True, > 'hidden': False, 'build_only': False} (force_visible: False) > == 2017-11-16 06:23:24,533 easyconfig.py:1656 DEBUG No alternative > software name specified to determine module name with > == 2017-11-16 06:23:24,534 utilities.py:103 DEBUG Module name > ncurses/6.0-intel-2017a validated > == 2017-11-16 06:23:24,534 easyconfig.py:1683 DEBUG Obtained valid full > module name ncurses/6.0-intel-2017a > == 2017-11-16 06:23:24,534 easyconfig.py:467 INFO Validating easyconfig > == 2017-11-16 06:23:24,534 easyconfig.py:472 INFO Checking OS dependencies > == 2017-11-16 06:23:24,535 filetools.py:301 INFO Command rpm found at > /usr/bin/rpm > == 2017-11-16 06:23:24,535 run.py:132 DEBUG run_cmd: running cmd rpm -q > openssl-devel (in /sNow/easybuild/software/EasyBuild/3.2.1/lib/python2.7/ > site-packages/easybuild_easyconfigs-3.2.1-py2.7.egg/ > easybuild/easyconfigs/o/OpenSSL) > == 2017-11-16 06:23:24,535 run.py:157 INFO running cmd: rpm -q > openssl-devel > == 2017-11-16 06:23:24,608 run.py:439 DEBUG cmd "rpm -q openssl-devel" > exited with exitcode 1 and output: > package openssl-devel is not installed > > == 2017-11-16 06:23:24,608 run.py:483 DEBUG Using default regular > expression: (?<![(,-]|\w)(?:error|segmentation > fault|failed)(?![(,-]|\.?\w) > == 2017-11-16 06:23:24,610 filetools.py:309 WARNING Could not find command > 'dpkg' (with permissions to read/execute it) in $PATH > (['/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.3.1/bin', > '/sNow/snow-tools/bin', '/sNow/snow-tools/sbin', '/usr/lib64/qt-3.3/bin', > '/usr/local/cuda-8.0/bin', '/sNow/snow-tools/bin', '/sNow/snow-tools/sbin', > '/usr/local/bin', '/usr/bin', '/bin', '/usr/local/games', '/usr/games', > '/opt/ibutils/bin']) > == 2017-11-16 06:23:24,610 filetools.py:301 INFO Command rpm found at > /usr/bin/rpm > == 2017-11-16 06:23:24,610 run.py:132 DEBUG run_cmd: running cmd rpm -q > libssl-dev (in /sNow/easybuild/software/EasyBuild/3.2.1/lib/python2.7/ > site-packages/easybuild_easyconfigs-3.2.1-py2.7.egg/ > easybuild/easyconfigs/o/OpenSSL) > == 2017-11-16 06:23:24,610 run.py:157 INFO running cmd: rpm -q libssl-dev > == 2017-11-16 06:23:24,683 run.py:439 DEBUG cmd "rpm -q libssl-dev" exited > with exitcode 1 and output: > package libssl-dev is not installed > > == 2017-11-16 06:23:24,683 run.py:483 DEBUG Using default regular > expression: (?<![(,-]|\w)(?:error|segmentation > fault|failed)(?![(,-]|\.?\w) > == 2017-11-16 06:23:24,684 filetools.py:309 WARNING Could not find command > 'dpkg' (with permissions to read/execute it) in $PATH > (['/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.3.1/bin', > '/sNow/snow-tools/bin', '/sNow/snow-tools/sbin', '/usr/lib64/qt-3.3/bin', > '/usr/local/cuda-8.0/bin', '/sNow/snow-tools/bin', '/sNow/snow-tools/sbin', > '/usr/local/bin', '/usr/bin', '/bin', '/usr/local/games', '/usr/games', > '/opt/ibutils/bin']) > == 2017-11-16 06:23:24,684 filetools.py:301 INFO Command rpm found at > /usr/bin/rpm > == 2017-11-16 06:23:24,685 run.py:132 DEBUG run_cmd: running cmd rpm -q > libopenssl-devel (in /sNow/easybuild/software/ > EasyBuild/3.2.1/lib/python2.7/site-packages/easybuild_ > easyconfigs-3.2.1-py2.7.egg/easybuild/easyconfigs/o/OpenSSL) > == 2017-11-16 06:23:24,685 run.py:157 INFO running cmd: rpm -q > libopenssl-devel > == 2017-11-16 06:23:24,746 run.py:439 DEBUG cmd "rpm -q libopenssl-devel" > exited with exitcode 1 and output: > package libopenssl-devel is not installed > > == 2017-11-16 06:23:24,747 run.py:483 DEBUG Using default regular > expression: (?<![(,-]|\w)(?:error|segmentation > fault|failed)(?![(,-]|\.?\w) > == 2017-11-16 06:23:24,747 filetools.py:309 WARNING Could not find command > 'dpkg' (with permissions to read/execute it) in $PATH > (['/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.3.1/bin', > '/sNow/snow-tools/bin', '/sNow/snow-tools/sbin', '/usr/lib64/qt-3.3/bin', > '/usr/local/cuda-8.0/bin', '/sNow/snow-tools/bin', '/sNow/snow-tools/sbin', > '/usr/local/bin', '/usr/bin', '/bin', '/usr/local/games', '/usr/games', > '/opt/ibutils/bin']) > == 2017-11-16 06:23:24,865 build_log.py:156 ERROR EasyBuild crashed with > an error (at easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/ > 3.3.1/lib/python2.7/site-packages/vsc_base-2.5.8-py2.7. > egg/vsc/utils/exceptions.py:124 in __init__): One or more OS dependencies > were not found: [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] (at > easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/ > 3.3.1/lib/python2.7/site-packages/easybuild_framework- > 3.3.1-py2.7.egg/easybuild/framework/easyconfig/easyconfig.py:525 in > validate_os_deps) > == 2017-11-16 06:23:24,866 build_log.py:156 ERROR EasyBuild crashed with > an error (at easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/ > 3.3.1/lib/python2.7/site-packages/vsc_base-2.5.8-py2.7. > egg/vsc/utils/exceptions.py:124 in __init__): Failed to process > easyconfig > /tmp/jobs/snow/2594/eb-En1YcP/tweaked_dep_easyconfigs/CMake-3.6.1-intel-2017a.eb: > One or more OS dependencies were not found: [('openssl-devel', > 'libssl-dev', 'libopenssl-devel')] (at easybuild/centos/7.3.1611/ > Broadwell/software/EasyBuild/3.3.1/lib/python2.7/site- > packages/easybuild_framework-3.3.1-py2.7.egg/easybuild/ > framework/easyconfig/easyconfig.py:1263 in process_easyconfig) > > > > *Joseph John* > > *Assistant Professor* > > *Department of Computer Science & Engineering* > *Rajagiri School of Engineering & Technology* > *https://josephjohnjj.github.io/ <https://josephjohnjj.github.io/>* > > On Thu, Nov 16, 2017 at 9:25 PM, Mr. Joseph John < > [email protected]> wrote: > >> Hi, >> I am attaching the entire log file. Unfortunately, it is too long to >> be included in the mail body. Sorry for the trouble. >> >> >> >> *Joseph John* >> >> *Assistant Professor* >> >> *Department of Computer Science & Engineering* >> *Rajagiri School of Engineering & Technology* >> *https://josephjohnjj.github.io/ <https://josephjohnjj.github.io/>* >> >> On Wed, Nov 15, 2017 at 8:54 PM, Alan O'Cais <[email protected]> >> wrote: >> >>> Hi Joesph, >>> >>> Can you give us the explicit error you are getting (or perhaps the whole >>> log file)? I'm just wondering where it is coming from, it's not directly >>> from EasyBuild, it's from one of the packages it is trying to install, the >>> question is which one. >>> >>> Alan >>> >>> On 13 November 2017 at 18:08, Mr. Joseph John < >>> [email protected]> wrote: >>> >>>> Hi, >>>> I tried that and now that error is gone. But now I get an error >>>> saying 'Linux headers" are missing. Is there anyway to install it through >>>> easybuild or do I have to install it directly in the PXE image? >>>> >>>> >>>> On Friday, November 10, 2017, Sami, Umit D. <[email protected]> >>>> wrote: >>>> >>>>> You can add OS dependencies as a parameter to your *.eb file and >>>>> install all dependencies with package manager for your linux distributions >>>>> (i.e. for centos: Yum install libssl-dev). >>>>> >>>>> >>>>> >>>>> *-----------------------------------* >>>>> >>>>> *Umit D. Sami* >>>>> >>>>> HPC Apps & Systems (ERIS) >>>>> >>>>> w: http://www.partners.org >>>>> >>>>> >>>>> >>>>> >>>>> >>>>> *From: *<[email protected]> on behalf of "Mr. Joseph >>>>> John" <[email protected]> >>>>> *Reply-To: *"[email protected]" <[email protected]> >>>>> *Date: *Friday, November 10, 2017 at 5:01 AM >>>>> *To: *"[email protected]" <[email protected]> >>>>> *Subject: *[easybuild] installing octave >>>>> >>>>> >>>>> >>>>> Hi, >>>>> >>>>> I am new to EasyBuild. I tried installing Octave using the >>>>> command : >>>>> >>>>> eb Octave-4.0.3-intel-2016b.eb --try-toolchain=intel,2017a -dr >>>>> >>>>> I keep getting the error >>>>> >>>>> >>>>> ERROR: Failed to process easyconfig /tmp/jobs/snow/2537/eb-Q5M8UC/ >>>>> tweaked_dep_easyconfigs/cURL-7.49.1-intel-2017a.eb: One or more OS >>>>> dependencies were not found: [('openssl-devel', 'libssl-dev', >>>>> 'libopenssl-devel')] >>>>> snow@sny02:/sNow/easybuild/software/EasyBuild/3.2.1/lib/pyth >>>>> on2.7/site-packages/easybuild_easyconfigs-3.2.1-py2.7.egg/ea >>>>> sybuild/easyconfigs/o/Oc >>>>> tave$ >>>>> >>>>> Then I installed openssl and libssl (that too using EasyBuild) >>>>> and I still get the error. We use single image provisioning in the compute >>>>> nodes. The software suite used in Snow! from HPCNow!. >>>>> >>>>> How do I solve this issue? >>>>> >>>>> >>>>> >>>>> *Joseph John* >>>>> >>>>> *Assistant Professor* >>>>> >>>>> *Department of Computer Science & Engineering* >>>>> >>>>> *Rajagiri School of Engineering & Technology* >>>>> *https://josephjohnjj.github.io/ <https://josephjohnjj.github.io/>* >>>>> >>>>> The information in this e-mail is intended only for the person to whom >>>>> it is >>>>> addressed. If you believe this e-mail was sent to you in error and the >>>>> e-mail >>>>> contains patient information, please contact the Partners Compliance >>>>> HelpLine at >>>>> http://www.partners.org/complianceline . If the e-mail was sent to >>>>> you in error >>>>> but does not contain patient information, please contact the sender >>>>> and properly >>>>> dispose of the e-mail. >>>>> >>>> >>>> >>>> -- >>>> >>>> >>>> *Joseph John * >>>> >>>> *Assistant Professor * >>>> >>>> *Department of Computer Science & Engineering * >>>> *Rajagiri School of Engineering & Technology* >>>> *https://josephjohnjj.github.io/ <https://josephjohnjj.github.io/>* >>>> >>>> >>> >>> >>> -- >>> Dr. Alan O'Cais >>> E-CAM Software Manager >>> Juelich Supercomputing Centre >>> Forschungszentrum Juelich GmbH >>> 52425 Juelich, Germany >>> >>> Phone: +49 2461 61 5213 <02461%20615213> >>> Fax: +49 2461 61 6656 <02461%20616656> >>> E-mail: [email protected] >>> WWW: http://www.fz-juelich.de/ias/jsc/EN >>> >>> >>> ------------------------------------------------------------ >>> ------------------------------------ >>> ------------------------------------------------------------ >>> ------------------------------------ >>> Forschungszentrum Juelich GmbH >>> 52425 Juelich >>> Sitz der Gesellschaft: Juelich >>> Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 >>> Vorsitzender des Aufsichtsrats: MinDir Dr. Karl Eugen Huthmacher >>> Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender), >>> Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt, >>> Prof. Dr. Sebastian M. Schmidt >>> ------------------------------------------------------------ >>> ------------------------------------ >>> ------------------------------------------------------------ >>> ------------------------------------ >>> >>> >> >
