Hi,
I installed the dependencies in the image i used. I did not make any
other changed. But the error still persists.
On Thursday, November 16, 2017, Alan O'Cais <a.oc...@fz-juelich.de> wrote:
> The error in this log is
> One or more OS dependencies were not found: [('openssl-devel',
> 'libssl-dev', 'libopenssl-devel')]
> which is the same as the first error, did you undo the change you made to
> the image you use?
>
> On 16 Nov 2017 18:03, "Mr. Joseph John" <jose...@rajagiritech.edu.in
> <javascript:_e(%7B%7D,'cvml','jose...@rajagiritech.edu.in');>> wrote:
>
>> Hi,
>> Unfortunately, the entire log file is 23MB. I am including the parts
>> of the log, I am assuming, is relevant :
>>
>> == 2017-11-16 06:23:24,532 easyconfig.py:907 DEBUG Using subtoolchain
>> {'version': '2017a', 'name': 'intel'} for dep ncurses 6.0
>> == 2017-11-16 06:23:24,532 easyconfig.py:916 DEBUG Figured out toolchain
>> to use for dep ncurses 6.0: {'version': '2017a', 'name': 'intel'}
>> == 2017-11-16 06:23:24,532 easyconfig.py:1704 DEBUG Determining short
>> module name for {'external_module_metadata': {}, 'full_mod_name': None,
>> 'toolchain': {'version': '2017a', 'name': 'intel'}, 'name': 'ncurses',
>> 'dummy': False, 'short_mod_name': None, 'external_module': False,
>> 'versionsuffix': '', 'version': '6.0', 'toolchain_inherited': True,
>> 'hidden': False, 'build_only': False} (force_visible: False)
>> == 2017-11-16 06:23:24,533 easyconfig.py:1656 DEBUG No alternative
>> software name specified to determine module name with
>> == 2017-11-16 06:23:24,533 utilities.py:103 DEBUG Module name
>> ncurses/6.0-intel-2017a validated
>> == 2017-11-16 06:23:24,533 easyconfig.py:1706 DEBUG Obtained valid short
>> module name ncurses/6.0-intel-2017a
>> == 2017-11-16 06:23:24,533 easyconfig.py:1676 DEBUG Determining full
>> module name for {'external_module_metadata': {}, 'full_mod_name': None,
>> 'toolchain': {'version': '2017a', 'name': 'intel'}, 'name': 'ncurses',
>> 'dummy': False, 'short_mod_name': None, 'external_module': False,
>> 'versionsuffix': '', 'version': '6.0', 'toolchain_inherited': True,
>> 'hidden': False, 'build_only': False} (force_visible: False)
>> == 2017-11-16 06:23:24,533 easyconfig.py:1656 DEBUG No alternative
>> software name specified to determine module name with
>> == 2017-11-16 06:23:24,534 utilities.py:103 DEBUG Module name
>> ncurses/6.0-intel-2017a validated
>> == 2017-11-16 06:23:24,534 easyconfig.py:1683 DEBUG Obtained valid full
>> module name ncurses/6.0-intel-2017a
>> == 2017-11-16 06:23:24,534 easyconfig.py:467 INFO Validating easyconfig
>> == 2017-11-16 06:23:24,534 easyconfig.py:472 INFO Checking OS dependencies
>> == 2017-11-16 06:23:24,535 filetools.py:301 INFO Command rpm found at
>> /usr/bin/rpm
>> == 2017-11-16 06:23:24,535 run.py:132 DEBUG run_cmd: running cmd rpm -q
>> openssl-devel (in /sNow/easybuild/software/EasyB
>> uild/3.2.1/lib/python2.7/site-packages/easybuild_easyconfigs
>> -3.2.1-py2.7.egg/easybuild/easyconfigs/o/OpenSSL)
>> == 2017-11-16 06:23:24,535 run.py:157 INFO running cmd: rpm -q
>> openssl-devel
>> == 2017-11-16 06:23:24,608 run.py:439 DEBUG cmd "rpm -q openssl-devel"
>> exited with exitcode 1 and output:
>> package openssl-devel is not installed
>>
>> == 2017-11-16 06:23:24,608 run.py:483 DEBUG Using default regular
>> expression: (?<![(,-]|\w)(?:error|segmentation
>> fault|failed)(?![(,-]|\.?\w)
>> == 2017-11-16 06:23:24,610 filetools.py:309 WARNING Could not find
>> command 'dpkg' (with permissions to read/execute it) in $PATH
>> (['/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.3.1/bin',
>> '/sNow/snow-tools/bin', '/sNow/snow-tools/sbin', '/usr/lib64/qt-3.3/bin',
>> '/usr/local/cuda-8.0/bin', '/sNow/snow-tools/bin', '/sNow/snow-tools/sbin',
>> '/usr/local/bin', '/usr/bin', '/bin', '/usr/local/games', '/usr/games',
>> '/opt/ibutils/bin'])
>> == 2017-11-16 06:23:24,610 filetools.py:301 INFO Command rpm found at
>> /usr/bin/rpm
>> == 2017-11-16 06:23:24,610 run.py:132 DEBUG run_cmd: running cmd rpm -q
>> libssl-dev (in /sNow/easybuild/software/EasyB
>> uild/3.2.1/lib/python2.7/site-packages/easybuild_easyconfigs
>> -3.2.1-py2.7.egg/easybuild/easyconfigs/o/OpenSSL)
>> == 2017-11-16 06:23:24,610 run.py:157 INFO running cmd: rpm -q libssl-dev
>> == 2017-11-16 06:23:24,683 run.py:439 DEBUG cmd "rpm -q libssl-dev"
>> exited with exitcode 1 and output:
>> package libssl-dev is not installed
>>
>> == 2017-11-16 06:23:24,683 run.py:483 DEBUG Using default regular
>> expression: (?<![(,-]|\w)(?:error|segmentation
>> fault|failed)(?![(,-]|\.?\w)
>> == 2017-11-16 06:23:24,684 filetools.py:309 WARNING Could not find
>> command 'dpkg' (with permissions to read/execute it) in $PATH
>> (['/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.3.1/bin',
>> '/sNow/snow-tools/bin', '/sNow/snow-tools/sbin', '/usr/lib64/qt-3.3/bin',
>> '/usr/local/cuda-8.0/bin', '/sNow/snow-tools/bin', '/sNow/snow-tools/sbin',
>> '/usr/local/bin', '/usr/bin', '/bin', '/usr/local/games', '/usr/games',
>> '/opt/ibutils/bin'])
>> == 2017-11-16 06:23:24,684 filetools.py:301 INFO Command rpm found at
>> /usr/bin/rpm
>> == 2017-11-16 06:23:24,685 run.py:132 DEBUG run_cmd: running cmd rpm -q
>> libopenssl-devel (in /sNow/easybuild/software/EasyB
>> uild/3.2.1/lib/python2.7/site-packages/easybuild_easyconfigs
>> -3.2.1-py2.7.egg/easybuild/easyconfigs/o/OpenSSL)
>> == 2017-11-16 06:23:24,685 run.py:157 INFO running cmd: rpm -q
>> libopenssl-devel
>> == 2017-11-16 06:23:24,746 run.py:439 DEBUG cmd "rpm -q libopenssl-devel"
>> exited with exitcode 1 and output:
>> package libopenssl-devel is not installed
>>
>> == 2017-11-16 06:23:24,747 run.py:483 DEBUG Using default regular
>> expression: (?<![(,-]|\w)(?:error|segmentation
>> fault|failed)(?![(,-]|\.?\w)
>> == 2017-11-16 06:23:24,747 filetools.py:309 WARNING Could not find
>> command 'dpkg' (with permissions to read/execute it) in $PATH
>> (['/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.3.1/bin',
>> '/sNow/snow-tools/bin', '/sNow/snow-tools/sbin', '/usr/lib64/qt-3.3/bin',
>> '/usr/local/cuda-8.0/bin', '/sNow/snow-tools/bin', '/sNow/snow-tools/sbin',
>> '/usr/local/bin', '/usr/bin', '/bin', '/usr/local/games', '/usr/games',
>> '/opt/ibutils/bin'])
>> == 2017-11-16 06:23:24,865 build_log.py:156 ERROR EasyBuild crashed with
>> an error (at easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.3.
>> 1/lib/python2.7/site-packages/vsc_base-2.5.8-py2.7.egg/vsc/utils/exceptions.py:124
>> in __init__): One or more OS dependencies were not found:
>> [('openssl-devel', 'libssl-dev', 'libopenssl-devel')] (at
>> easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.3.
>> 1/lib/python2.7/site-packages/easybuild_framework-3.3.1-py2.
>> 7.egg/easybuild/framework/easyconfig/easyconfig.py:525 in
>> validate_os_deps)
>> == 2017-11-16 06:23:24,866 build_log.py:156 ERROR EasyBuild crashed with
>> an error (at easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.3.
>> 1/lib/python2.7/site-packages/vsc_base-2.5.8-py2.7.egg/vsc/utils/exceptions.py:124
>> in __init__): Failed to process easyconfig /tmp/jobs/snow/2594/eb-En1YcP/
>> tweaked_dep_easyconfigs/CMake-3.6.1-intel-2017a.eb: One or more OS
>> dependencies were not found: [('openssl-devel', 'libssl-dev',
>> 'libopenssl-devel')] (at easybuild/centos/7.3.1611/Broa
>> dwell/software/EasyBuild/3.3.1/lib/python2.7/site-packages/
>> easybuild_framework-3.3.1-py2.7.egg/easybuild/framework/easyconfig/easyconfig.py:1263
>> in process_easyconfig)
>>
>>
>>
>> *Joseph John*
>>
>> *Assistant Professor*
>>
>> *Department of Computer Science & Engineering*
>> *Rajagiri School of Engineering & Technology*
>> *https://josephjohnjj.github.io/ <https://josephjohnjj.github.io/>*
>>
>> On Thu, Nov 16, 2017 at 9:25 PM, Mr. Joseph John <
>> jose...@rajagiritech.edu.in
>> <javascript:_e(%7B%7D,'cvml','jose...@rajagiritech.edu.in');>> wrote:
>>
>>> Hi,
>>> I am attaching the entire log file. Unfortunately, it is too long
>>> to be included in the mail body. Sorry for the trouble.
>>>
>>>
>>>
>>> *Joseph John*
>>>
>>> *Assistant Professor*
>>>
>>> *Department of Computer Science & Engineering*
>>> *Rajagiri School of Engineering & Technology*
>>> *https://josephjohnjj.github.io/ <https://josephjohnjj.github.io/>*
>>>
>>> On Wed, Nov 15, 2017 at 8:54 PM, Alan O'Cais <a.oc...@fz-juelich.de
>>> <javascript:_e(%7B%7D,'cvml','a.oc...@fz-juelich.de');>> wrote:
>>>
>>>> Hi Joesph,
>>>>
>>>> Can you give us the explicit error you are getting (or perhaps the
>>>> whole log file)? I'm just wondering where it is coming from, it's not
>>>> directly from EasyBuild, it's from one of the packages it is trying to
>>>> install, the question is which one.
>>>>
>>>> Alan
>>>>
>>>> On 13 November 2017 at 18:08, Mr. Joseph John <
>>>> jose...@rajagiritech.edu.in
>>>> <javascript:_e(%7B%7D,'cvml','jose...@rajagiritech.edu.in');>> wrote:
>>>>
>>>>> Hi,
>>>>> I tried that and now that error is gone. But now I get an error
>>>>> saying 'Linux headers" are missing. Is there anyway to install it through
>>>>> easybuild or do I have to install it directly in the PXE image?
>>>>>
>>>>>
>>>>> On Friday, November 10, 2017, Sami, Umit D. <uds...@partners.org
>>>>> <javascript:_e(%7B%7D,'cvml','uds...@partners.org');>> wrote:
>>>>>
>>>>>> You can add OS dependencies as a parameter to your *.eb file and
>>>>>> install all dependencies with package manager for your linux
>>>>>> distributions
>>>>>> (i.e. for centos: Yum install libssl-dev).
>>>>>>
>>>>>>
>>>>>>
>>>>>> *-----------------------------------*
>>>>>>
>>>>>> *Umit D. Sami*
>>>>>>
>>>>>> HPC Apps & Systems (ERIS)
>>>>>>
>>>>>> w: http://www.partners.org
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>> *From: *<easybuild-requ...@lists.ugent.be> on behalf of "Mr. Joseph
>>>>>> John" <jose...@rajagiritech.edu.in>
>>>>>> *Reply-To: *"easybuild@lists.ugent.be" <easybuild@lists.ugent.be>
>>>>>> *Date: *Friday, November 10, 2017 at 5:01 AM
>>>>>> *To: *"easybuild@lists.ugent.be" <easybuild@lists.ugent.be>
>>>>>> *Subject: *[easybuild] installing octave
>>>>>>
>>>>>>
>>>>>>
>>>>>> Hi,
>>>>>>
>>>>>> I am new to EasyBuild. I tried installing Octave using the
>>>>>> command :
>>>>>>
>>>>>> eb Octave-4.0.3-intel-2016b.eb --try-toolchain=intel,2017a -dr
>>>>>>
>>>>>> I keep getting the error
>>>>>>
>>>>>>
>>>>>> ERROR: Failed to process easyconfig /tmp/jobs/snow/2537/eb-Q5M8UC/
>>>>>> tweaked_dep_easyconfigs/cURL-7.49.1-intel-2017a.eb: One or more OS
>>>>>> dependencies were not found: [('openssl-devel', 'libssl-dev',
>>>>>> 'libopenssl-devel')]
>>>>>> snow@sny02:/sNow/easybuild/software/EasyBuild/3.2.1/lib/pyth
>>>>>> on2.7/site-packages/easybuild_easyconfigs-3.2.1-py2.7.egg/ea
>>>>>> sybuild/easyconfigs/o/Oc
>>>>>> tave$
>>>>>>
>>>>>> Then I installed openssl and libssl (that too using EasyBuild)
>>>>>> and I still get the error. We use single image provisioning in the
>>>>>> compute
>>>>>> nodes. The software suite used in Snow! from HPCNow!.
>>>>>>
>>>>>> How do I solve this issue?
>>>>>>
>>>>>>
>>>>>>
>>>>>> *Joseph John*
>>>>>>
>>>>>> *Assistant Professor*
>>>>>>
>>>>>> *Department of Computer Science & Engineering*
>>>>>>
>>>>>> *Rajagiri School of Engineering & Technology*
>>>>>> *https://josephjohnjj.github.io/ <https://josephjohnjj.github.io/>*
>>>>>>
>>>>>> The information in this e-mail is intended only for the person to
>>>>>> whom it is
>>>>>> addressed. If you believe this e-mail was sent to you in error and
>>>>>> the e-mail
>>>>>> contains patient information, please contact the Partners Compliance
>>>>>> HelpLine at
>>>>>> http://www.partners.org/complianceline . If the e-mail was sent to
>>>>>> you in error
>>>>>> but does not contain patient information, please contact the sender
>>>>>> and properly
>>>>>> dispose of the e-mail.
>>>>>>
>>>>>
>>>>>
>>>>> --
>>>>>
>>>>>
>>>>> *Joseph John *
>>>>>
>>>>> *Assistant Professor *
>>>>>
>>>>> *Department of Computer Science & Engineering *
>>>>> *Rajagiri School of Engineering & Technology*
>>>>> *https://josephjohnjj.github.io/ <https://josephjohnjj.github.io/>*
>>>>>
>>>>>
>>>>
>>>>
>>>> --
>>>> Dr. Alan O'Cais
>>>> E-CAM Software Manager
>>>> Juelich Supercomputing Centre
>>>> Forschungszentrum Juelich GmbH
>>>> 52425 Juelich, Germany
>>>>
>>>> Phone: +49 2461 61 5213 <02461%20615213>
>>>> Fax: +49 2461 61 6656 <02461%20616656>
>>>> E-mail: a.oc...@fz-juelich.de
>>>> <javascript:_e(%7B%7D,'cvml','a.oc...@fz-juelich.de');>
>>>> WWW: http://www.fz-juelich.de/ias/jsc/EN
>>>>
>>>>
>>>> ------------------------------------------------------------
>>>> ------------------------------------
>>>> ------------------------------------------------------------
>>>> ------------------------------------
>>>> Forschungszentrum Juelich GmbH
>>>> 52425 Juelich
>>>> Sitz der Gesellschaft: Juelich
>>>> Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498
>>>> Vorsitzender des Aufsichtsrats: MinDir Dr. Karl Eugen Huthmacher
>>>> Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender),
>>>> Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt,
>>>> Prof. Dr. Sebastian M. Schmidt
>>>> ------------------------------------------------------------
>>>> ------------------------------------
>>>> ------------------------------------------------------------
>>>> ------------------------------------
>>>>
>>>>
>>>
>>
--
*Joseph John*
*Assistant Professor*
*Department of Computer Science & Engineering*
*Rajagiri School of Engineering & Technology*
*https://josephjohnjj.github.io/ <https://josephjohnjj.github.io/>*
