Yup, that was it again. Thanks Kenneth!
-- Davide Vanzo, PhD Application Developer Adjunct Assistant Professor of Chemical and Biomolecular Engineering Advanced Computing Center for Research and Education (ACCRE) Vanderbilt University - Hill Center 201 (615)-875-9137 www.accre.vanderbilt.edu On 2018-01-05 09:10:32-06:00 [email protected] wrote: Hi Davide, On 04/01/2018 22:36, Vanzo, Davide wrote: Hello EasyBuilders! Background: at our site we install Python (2.x.y and 3.x.y) without numpy so that we can bump it down from foss to GCC and from intel to iccifort. Then numpy is built as a separate module with the foss and intel toolchains. Same for scipy, mpi4py and pandas. For some reason that I cannot understand I am getting the error below when I try to install numpy with the intel-2016b toolchain. If I try to run the same python command manually, it works fine. Any idea? Attached you can find the full log with debug and the easyconfig file I am using. The "exit 11" points in the direction of a segmentation fault, so did you properly replace libintlc.so.5 in the icc, ifort *and* imkl installations included in the intel/2016b toolchain, as discussed in a previous post (cfr. https://lists.ugent.be/wws/arc/easybuild/2018-01/msg00012.html<https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Flists.ugent.be%2Fwws%2Farc%2Feasybuild%2F2018-01%2Fmsg00012.html&data=02%7C01%7Cdavide.vanzo%40vanderbilt.edu%7C2b92d86e44b747007fc208d5544e659b%7Cba5a7f39e3be4ab3b45067fa80faecad%7C0%7C0%7C636507618316711814&sdata=09rnuxhxP8Zyx9SxOLq8aDkOiLGONHe7AqZY4flUaVk%3D&reserved=0>)? Maybe the problem only occurs with numpy because that needs imkl while your Python build doesn't since it was built with iccifort? regards, Kenneth Thanks! -- Davide Vanzo, PhD Application Developer Adjunct Assistant Professor of Chemical and Biomolecular Engineering Advanced Computing Center for Research and Education (ACCRE) Vanderbilt University - Hill Center 201 (615)-875-9137 www.accre.vanderbilt.edu<https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.accre.vanderbilt.edu&data=02%7C01%7Cdavide.vanzo%40vanderbilt.edu%7C2b92d86e44b747007fc208d5544e659b%7Cba5a7f39e3be4ab3b45067fa80faecad%7C0%7C0%7C636507618316711814&sdata=LCsXbLOwy0mkEOcpyK97xFYxefkslQiuk8mY8xzxaNQ%3D&reserved=0>
