Dear Ole,
use
configopts += '--without-ucx '
in the OpenMPI easyconfig
Sincerely,
Balazs
On 05/03/2018 15:27, Ole Holm Nielsen wrote:
Using EB 3.5.2 I'm trying to build the latest iomkl:
eb iomkl-2018a.eb -r
This works like a charm on 2 of our 3 binary architectures, but on our
Sandy Bridge nodes with Mellanox Infiniband the build aborts:
# eb iomkl-2018a.eb -r
== temporary log file in case of crash
/tmp/eb-Dnjmix/easybuild-6WeIK9.log
== resolving dependencies ...
== processing EasyBuild easyconfig
/home/modules/software/EasyBuild/3.5.2/lib/python2.7/site-packages/easybuild_easyconfigs-3.5.2-py2.7.egg/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.1.2-iccifort-2018.1.163-GCC-6.4.0-2.28.eb
== building and installing
OpenMPI/2.1.2-iccifort-2018.1.163-GCC-6.4.0-2.28...
== fetching files...
== creating build dir, resetting environment...
== unpacking...
== patching...
== preparing...
== configuring...
== building...
== FAILED: Installation ended unsuccessfully (build directory:
/home/modules/build/OpenMPI/2.1.2/iccifort-2018.1.163-GCC-6.4.0-2.28):
build failed (first 300 chars): cmd " make -j 16 " exited with exit
code 2 and output:
Making all in config
make[1]: Entering directory
`/home/modules/build/OpenMPI/2.1.2/iccifort-2018.1.163-GCC-6.4.0-2.28/openmpi-2.1.2/config'
make[1]: Nothing to be done for `all'.
make[1]: Leaving directory `/home/modules/build/OpenMPI/2.1.2/icc
...
The end of the log file
/tmp/eb-Dnjmix/easybuild-OpenMPI-2.1.2-20180305.144907.SAFtP.log
contains:
libtool: error: require no space between '-L' and '-lrt'
make[2]: *** [libmca_pml_ucx.la] Error 1
make[2]: Leaving directory
`/home/modules/build/OpenMPI/2.1.2/iccifort-2018.1.163-GCC-6.4.0-2.28/openmpi-2.1.2/ompi/mca/pml/ucx'
make[1]: *** [all-recursive] Error 1
I can't make out what's causing this. Perhaps the build server has a
library installed triggering an error?
Thanks for any suggestions!
--
HPC consultant
HPC/VSC Support and System Administration
Computing Center
ULB/VUB
Avenue Adolphe Buyllaan 91 - CP 197
1050 Brussels
Belgium
