To clarify, it's a bug in the OpenMPI configure script when dealing with UCX which they haven't fixed.
On 03/05/2018 03:36 PM, Balázs Hajgató wrote: > Dear Ole, > > use > configopts += '--without-ucx ' > > in the OpenMPI easyconfig > > Sincerely, > > Balazs > > > On 05/03/2018 15:27, Ole Holm Nielsen wrote: >> Using EB 3.5.2 I'm trying to build the latest iomkl: >> >> eb iomkl-2018a.eb -r >> >> This works like a charm on 2 of our 3 binary architectures, but on our >> Sandy Bridge nodes with Mellanox Infiniband the build aborts: >> >> # eb iomkl-2018a.eb -r >> == temporary log file in case of crash >> /tmp/eb-Dnjmix/easybuild-6WeIK9.log >> == resolving dependencies ... >> == processing EasyBuild easyconfig >> /home/modules/software/EasyBuild/3.5.2/lib/python2.7/site-packages/easybuild_easyconfigs-3.5.2-py2.7.egg/easybuild/easyconfigs/o/OpenMPI/OpenMPI-2.1.2-iccifort-2018.1.163-GCC-6.4.0-2.28.eb >> >> == building and installing >> OpenMPI/2.1.2-iccifort-2018.1.163-GCC-6.4.0-2.28... >> == fetching files... >> == creating build dir, resetting environment... >> == unpacking... >> == patching... >> == preparing... >> == configuring... >> == building... >> == FAILED: Installation ended unsuccessfully (build directory: >> /home/modules/build/OpenMPI/2.1.2/iccifort-2018.1.163-GCC-6.4.0-2.28): >> build failed (first 300 chars): cmd " make -j 16 " exited with exit >> code 2 and output: >> Making all in config >> make[1]: Entering directory >> `/home/modules/build/OpenMPI/2.1.2/iccifort-2018.1.163-GCC-6.4.0-2.28/openmpi-2.1.2/config' >> >> make[1]: Nothing to be done for `all'. >> make[1]: Leaving directory `/home/modules/build/OpenMPI/2.1.2/icc >> ... >> >> The end of the log file >> /tmp/eb-Dnjmix/easybuild-OpenMPI-2.1.2-20180305.144907.SAFtP.log >> contains: >> >> libtool: error: require no space between '-L' and '-lrt' >> make[2]: *** [libmca_pml_ucx.la] Error 1 >> make[2]: Leaving directory >> `/home/modules/build/OpenMPI/2.1.2/iccifort-2018.1.163-GCC-6.4.0-2.28/openmpi-2.1.2/ompi/mca/pml/ucx' >> >> make[1]: *** [all-recursive] Error 1 >> >> I can't make out what's causing this. Perhaps the build server has a >> library installed triggering an error? >> >> Thanks for any suggestions! >> > -- Ake Sandgren, HPC2N, Umea University, S-90187 Umea, Sweden Internet: [email protected] Phone: +46 90 7866134 Fax: +46 90-580 14 Mobile: +46 70 7716134 WWW: http://www.hpc2n.umu.se
