Hi everyone,
I'm trying to compile openmpi-2.1.1 with Clang and GCC. I've made some custom easyconfigs, they're in the attachment. I get an error that the c compiler is not working, when I run the configure command by hand using the same options and with the same modules loaded it configure just fine. Any thoughts on this? Thanks in advance, Victor
Clang-5.0.0-GCC-6.4.0-2.28.eb
Description: Clang-5.0.0-GCC-6.4.0-2.28.eb
ClangGCC-2017b.eb
Description: ClangGCC-2017b.eb
OpenMPI-2.1.1-ClangGCC-2017b.eb
Description: OpenMPI-2.1.1-ClangGCC-2017b.eb
== 2018-09-20 11:58:45,222 main.py:80 INFO This is EasyBuild 3.6.2 (framework: 3.6.2, easyblocks: 3.6.2) on host tud277526. == 2018-09-20 11:58:45,223 main.py:83 INFO Command line: --buildpath='/software/easybuild/build' --containerpath='/software/easybuild/containers' --info --installpath='/software/easybuild' --packagepath='/software/easybuild/packages' --prefix='/software/easybuild' --repositorypath='/software/easybuild/ebfiles_repo' --robot='/software/easybuild/ebfiles_repo:/software/easybuild/software/EasyBuild/3.6.2/lib/python2.7/site-packages/easybuild_easyconfigs-3.6.2-py2.7.egg/easybuild/easyconfigs' --robot-paths='/software/easybuild/ebfiles_repo:' --sourcepath='/software/easybuild/sources' ./OpenMPI-2.1.1-ClangGCC-2017b.eb == 2018-09-20 11:58:45,223 main.py:85 INFO Using /tmp/eb-D2HGAG as temporary directory == 2018-09-20 11:58:45,223 robot.py:56 INFO Using robot path(s): ['/software/easybuild/ebfiles_repo', '/software/easybuild/software/EasyBuild/3.6.2/lib/python2.7/site-packages/easybuild_easyconfigs-3.6.2-py2.7.egg/easybuild/easyconfigs'] == 2018-09-20 11:58:45,223 options.py:1241 INFO Using default external modules metadata cfg files: ['/software/easybuild/software/EasyBuild/3.6.2/lib/python2.7/site-packages/easybuild_framework-3.6.2-py2.7.egg/etc/ohpc_external_modules_metadata.cfg', '/software/easybuild/software/EasyBuild/3.6.2/lib/python2.7/site-packages/easybuild_framework-3.6.2-py2.7.egg/etc/cray_external_modules_metadata.cfg'] == 2018-09-20 11:58:45,229 environment.py:97 INFO Environment variable LMOD_QUIET set to 1 (previously undefined) == 2018-09-20 11:58:45,229 environment.py:97 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previously undefined) == 2018-09-20 11:58:45,229 environment.py:97 INFO Environment variable LMOD_REDIRECT set to no (previously undefined) == 2018-09-20 11:58:45,229 filetools.py:343 INFO Command lmod found at /software/lmod/7.8/libexec/lmod == 2018-09-20 11:58:45,229 filetools.py:343 INFO Command lmod found at /software/lmod/7.8/libexec/lmod == 2018-09-20 11:58:45,229 filetools.py:343 INFO Command lmod found at /software/lmod/7.8/libexec/lmod == 2018-09-20 11:58:45,229 modules.py:264 INFO Full path for module command is /software/lmod/7.8/libexec/lmod, so using it == 2018-09-20 11:58:45,299 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previously undefined) == 2018-09-20 11:58:45,299 environment.py:97 INFO Environment variable LD_PRELOAD set to (previously undefined) == 2018-09-20 11:58:45,300 modules.py:409 INFO Prepended list of module paths with path used by EasyBuild: /software/easybuild/modules/all == 2018-09-20 11:58:45,300 run.py:192 INFO running cmd: type module == 2018-09-20 11:58:45,332 modules.py:223 INFO Found version 7.8 == 2018-09-20 11:58:45,332 modules.py:231 INFO Converted actual version to '7.8' == 2018-09-20 11:58:45,365 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '') == 2018-09-20 11:58:45,366 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') == 2018-09-20 11:58:45,366 filetools.py:343 INFO Command eb found at /software/easybuild/software/EasyBuild/3.6.2/bin/eb == 2018-09-20 11:58:45,368 easyconfig.py:279 INFO Performing quick parse to check for valid easyconfig file... == 2018-09-20 11:58:45,372 environment.py:97 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') == 2018-09-20 11:58:45,372 environment.py:97 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') == 2018-09-20 11:58:45,372 environment.py:97 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') == 2018-09-20 11:58:45,372 filetools.py:343 INFO Command lmod found at /software/lmod/7.8/libexec/lmod == 2018-09-20 11:58:45,372 filetools.py:343 INFO Command lmod found at /software/lmod/7.8/libexec/lmod == 2018-09-20 11:58:45,372 filetools.py:343 INFO Command lmod found at /software/lmod/7.8/libexec/lmod == 2018-09-20 11:58:45,372 modules.py:264 INFO Full path for module command is /software/lmod/7.8/libexec/lmod, so using it == 2018-09-20 11:58:45,373 modules.py:409 INFO Prepended list of module paths with path used by EasyBuild: /software/easybuild/modules/all == 2018-09-20 11:58:45,373 easyconfig.py:288 INFO Obtained list of valid module classes: ['base', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'phys', 'system', 'toolchain', 'tools', 'vis'] == 2018-09-20 11:58:45,375 easyconfig.py:1096 INFO Derived full easyblock module path for ConfigureMake: easybuild.easyblocks.generic.configuremake == 2018-09-20 11:58:45,375 easyconfig.py:1142 INFO Successfully obtained class 'ConfigureMake' for easyblock 'ConfigureMake' (software name 'OpenMPI') == 2018-09-20 11:58:45,376 easyconfig.py:414 INFO Parsing easyconfig file /home/vwkoppejan/Downloads/OpenMPI-2.1.1-ClangGCC-2017b.eb with rawcontent: easyblock = 'ConfigureMake' name = 'OpenMPI' version = '2.1.1' homepage = 'http://www.open-mpi.org/' description = """The Open MPI Project is an open source MPI-2 implementation.""" toolchain = {'name': 'ClangGCC', 'version': '2017b'} source_urls = ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] sources = [SOURCELOWER_TAR_GZ] checksums = ['afe4bef3c4378bc76eea96c623d5aa4c1c98b9e057d281c646e68869292a77dc'] dependencies = [('hwloc', '1.11.7', '', ('GCCcore', '6.4.0'))] configopts = '--enable-shared --enable-mpi-thread-multiple --with-verbs ' configopts += '--enable-mpirun-prefix-by-default ' # suppress failure modes in relation to mpirun path configopts += '--with-hwloc=$EBROOTHWLOC ' # hwloc support configopts += '--without-ucx ' # hard disable UCX, to dance around bug (https://github.com/open-mpi/ompi/issues/4345) # needed for --with-verbs osdependencies = [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')] libs = ["mpi_mpifh", "mpi", "ompitrace", "open-pal", "open-rte"] sanity_check_paths = { 'files': ["bin/%s" % binfile for binfile in ["ompi_info", "opal_wrapper", "orterun"]] + ["lib/lib%s.%s" % (libfile, SHLIB_EXT) for libfile in libs] + ["include/%s.h" % x for x in ["mpi-ext", "mpif-config", "mpif", "mpi", "mpi_portable_platform"]], 'dirs': [], } moduleclass = 'mpi' == 2018-09-20 11:58:45,376 parser.py:138 INFO Type checking of easyconfig parameter values passed! == 2018-09-20 11:58:45,378 easyconfig.py:447 INFO setting config option toolchain: value {'version': '2017b', 'name': 'ClangGCC'} (type: <type 'dict'>) == 2018-09-20 11:58:45,378 easyconfig.py:447 INFO setting config option sanity_check_paths: value {'files': ['bin/ompi_info', 'bin/opal_wrapper', 'bin/orterun', 'lib/libmpi_mpifh.so', 'lib/libmpi.so', 'lib/libompitrace.so', 'lib/libopen-pal.so', 'lib/libopen-rte.so', 'include/mpi-ext.h', 'include/mpif-config.h', 'include/mpif.h', 'include/mpi.h', 'include/mpi_portable_platform.h'], 'dirs': []} (type: <type 'dict'>) == 2018-09-20 11:58:45,378 easyconfig.py:447 INFO setting config option toolchain: value {'version': '2017b', 'name': 'ClangGCC'} (type: <type 'dict'>) == 2018-09-20 11:58:45,378 easyconfig.py:447 INFO setting config option name: value OpenMPI (type: <type 'str'>) == 2018-09-20 11:58:45,379 easyconfig.py:447 INFO setting config option moduleclass: value mpi (type: <type 'str'>) == 2018-09-20 11:58:45,379 easyconfig.py:1215 WARNING Unable to resolve template value %(namelower)s-%(version)s.tar.gz with dict {'bitbucket_account': '%(namelower)s', 'versionsuffix': '', 'toolchain_name': 'ClangGCC', 'toolchain_version': '2017b', 'versionprefix': ''} == 2018-09-20 11:58:45,379 easyconfig.py:1215 WARNING Unable to resolve template value %(namelower)s-%(version)s.tar.gz with dict {'bitbucket_account': '%(namelower)s', 'versionsuffix': '', 'toolchain_name': 'ClangGCC', 'toolchain_version': '2017b', 'versionprefix': ''} == 2018-09-20 11:58:45,379 easyconfig.py:447 INFO setting config option sources: value ['%(namelower)s-%(version)s.tar.gz'] (type: <type 'list'>) == 2018-09-20 11:58:45,379 easyconfig.py:447 INFO setting config option version: value 2.1.1 (type: <type 'str'>) == 2018-09-20 11:58:45,380 easyconfig.py:447 INFO setting config option dependencies: value [{'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '6.4.0', 'name': 'GCCcore'}, 'name': 'hwloc', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '', 'version': '1.11.7', 'toolchain_inherited': False, 'hidden': False, 'build_only': False}] (type: <type 'list'>) == 2018-09-20 11:58:45,380 easyconfig.py:1215 WARNING Unable to resolve template value http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads with dict {'bitbucket_account': '%(namelower)s', 'versionsuffix': '', 'toolchain_name': 'ClangGCC', 'toolchain_version': '2017b', 'versionprefix': ''} == 2018-09-20 11:58:45,380 easyconfig.py:1215 WARNING Unable to resolve template value http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads with dict {'bitbucket_account': '%(namelower)s', 'versionsuffix': '', 'toolchain_name': 'ClangGCC', 'toolchain_version': '2017b', 'versionprefix': ''} == 2018-09-20 11:58:45,380 easyconfig.py:447 INFO setting config option source_urls: value ['http://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads'] (type: <type 'list'>) == 2018-09-20 11:58:45,380 easyconfig.py:447 INFO setting config option easyblock: value ConfigureMake (type: <type 'str'>) == 2018-09-20 11:58:45,380 easyconfig.py:447 INFO setting config option checksums: value ['afe4bef3c4378bc76eea96c623d5aa4c1c98b9e057d281c646e68869292a77dc'] (type: <type 'list'>) == 2018-09-20 11:58:45,380 easyconfig.py:447 INFO setting config option osdependencies: value [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')] (type: <type 'list'>) == 2018-09-20 11:58:45,380 easyconfig.py:447 INFO setting config option homepage: value http://www.open-mpi.org/ (type: <type 'str'>) == 2018-09-20 11:58:45,380 easyconfig.py:447 INFO setting config option configopts: value --enable-shared --enable-mpi-thread-multiple --with-verbs --enable-mpirun-prefix-by-default --with-hwloc=$EBROOTHWLOC --without-ucx (type: <type 'str'>) == 2018-09-20 11:58:45,381 easyconfig.py:447 INFO setting config option description: value The Open MPI Project is an open source MPI-2 implementation. (type: <type 'str'>) == 2018-09-20 11:58:45,381 easyconfig.py:470 INFO Validating easyconfig == 2018-09-20 11:58:45,381 easyconfig.py:475 INFO Checking OS dependencies == 2018-09-20 11:58:45,382 filetools.py:351 WARNING Could not find command 'rpm' (with permissions to read/execute it) in $PATH (['/software/easybuild/software/EasyBuild/3.6.2/bin', '/software/lmod/7.8/libexec', '/home/vwkoppejan/bin', '/home/vwkoppejan/.local/bin', '/usr/local/sbin', '/usr/local/bin', '/usr/sbin', '/usr/bin', '/sbin', '/bin', '/usr/games', '/usr/local/games', '/snap/bin']) == 2018-09-20 11:58:45,382 filetools.py:343 INFO Command dpkg found at /usr/bin/dpkg == 2018-09-20 11:58:45,382 run.py:192 INFO running cmd: dpkg -s libibverbs-dev == 2018-09-20 11:58:45,421 filetools.py:351 WARNING Could not find command 'rpm' (with permissions to read/execute it) in $PATH (['/software/easybuild/software/EasyBuild/3.6.2/bin', '/software/lmod/7.8/libexec', '/home/vwkoppejan/bin', '/home/vwkoppejan/.local/bin', '/usr/local/sbin', '/usr/local/bin', '/usr/sbin', '/usr/bin', '/sbin', '/bin', '/usr/games', '/usr/local/games', '/snap/bin']) == 2018-09-20 11:58:45,421 filetools.py:343 INFO Command dpkg found at /usr/bin/dpkg == 2018-09-20 11:58:45,422 run.py:192 INFO running cmd: dpkg -s libibverbs-devel == 2018-09-20 11:58:45,459 filetools.py:351 WARNING Could not find command 'rpm' (with permissions to read/execute it) in $PATH (['/software/easybuild/software/EasyBuild/3.6.2/bin', '/software/lmod/7.8/libexec', '/home/vwkoppejan/bin', '/home/vwkoppejan/.local/bin', '/usr/local/sbin', '/usr/local/bin', '/usr/sbin', '/usr/bin', '/sbin', '/bin', '/usr/games', '/usr/local/games', '/snap/bin']) == 2018-09-20 11:58:45,460 filetools.py:343 INFO Command dpkg found at /usr/bin/dpkg == 2018-09-20 11:58:45,460 run.py:192 INFO running cmd: dpkg -s rdma-core-devel == 2018-09-20 11:58:45,492 easyconfig.py:530 INFO OS dependencies ok: [('libibverbs-dev', 'libibverbs-devel', 'rdma-core-devel')] == 2018-09-20 11:58:45,492 easyconfig.py:480 INFO Checking skipsteps == 2018-09-20 11:58:45,492 easyconfig.py:485 INFO Checking build option lists == 2018-09-20 11:58:45,492 easyconfig.py:488 INFO Checking licenses == 2018-09-20 11:58:45,493 easyconfig.py:279 INFO Performing quick parse to check for valid easyconfig file... == 2018-09-20 11:58:45,495 environment.py:97 INFO Environment variable LMOD_QUIET set to 1 (previous value: '1') == 2018-09-20 11:58:45,496 environment.py:97 INFO Environment variable LMOD_IGNORE_CACHE set to 1 (previous value: '1') == 2018-09-20 11:58:45,496 environment.py:97 INFO Environment variable LMOD_REDIRECT set to no (previous value: 'no') == 2018-09-20 11:58:45,496 filetools.py:343 INFO Command lmod found at /software/lmod/7.8/libexec/lmod == 2018-09-20 11:58:45,496 filetools.py:343 INFO Command lmod found at /software/lmod/7.8/libexec/lmod == 2018-09-20 11:58:45,496 filetools.py:343 INFO Command lmod found at /software/lmod/7.8/libexec/lmod == 2018-09-20 11:58:45,496 modules.py:264 INFO Full path for module command is /software/lmod/7.8/libexec/lmod, so using it == 2018-09-20 11:58:45,497 modules.py:409 INFO Prepended list of module paths with path used by EasyBuild: /software/easybuild/modules/all == 2018-09-20 11:58:45,497 easyconfig.py:288 INFO Obtained list of valid module classes: ['base', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'phys', 'system', 'toolchain', 'tools', 'vis'] == 2018-09-20 11:58:45,499 easyconfig.py:1096 INFO Derived full easyblock module path for Toolchain: easybuild.easyblocks.generic.toolchain == 2018-09-20 11:58:45,499 easyconfig.py:1142 INFO Successfully obtained class 'Toolchain' for easyblock 'Toolchain' (software name 'ClangGCC') == 2018-09-20 11:58:45,500 easyconfig.py:414 INFO Parsing easyconfig file /software/easybuild/ebfiles_repo/ClangGCC/ClangGCC-2017b.eb with rawcontent: # Built with EasyBuild version 3.6.2 on 2018-08-25_17-49-19 # Built with EasyBuild version 3.6.2 on 2018-08-14_13-34-44 easyblock = "Toolchain" name = 'ClangGCC' version = '2017b' homepage = '(none)' description = """Clang and GCC based compiler toolchain. Clang will use libstdc++. GFortran will be used to compile Fortran code.""" toolchain = {'name': 'dummy', 'version': 'dummy'} gccver = '6.4.0-2.28' comp = ('GCC', gccver) dependencies = [ comp, ('Clang', '5.0.0', '', comp), ] moduleclass = 'toolchain' # Build statistics buildstats = [{ "build_time": 0.76, "command_line": ["--buildpath='/software/easybuild/build'", "--containerpath='/software/easybuild/containers'", "--installpath='/software/easybuild'", "--packagepath='/software/easybuild/packages'", "--prefix='/software/easybuild'", "--repositorypath='/software/easybuild/ebfiles_repo'", "--robot='/software/easybuild/ebfiles_repo:/software/easybuild/software/EasyBuild/3.6.2/lib/python2.7/site-packages/easybuild_easyconfigs-3.6.2-py2.7.egg/easybuild/easyconfigs'", "--robot-paths='/software/easybuild/ebfiles_repo:'", "--sourcepath='/software/easybuild/sources'", './ClangGCC-2017b.eb'], "core_count": 8, "cpu_model": "Intel(R) Xeon(R) CPU E5-1620 v2 @ 3.70GHz", "cpu_speed": 3900.0, "cpu_vendor": "Intel", "easybuild-easyblocks_version": "3.6.2", "easybuild-framework_version": "3.6.2", "gcc_version": "Using built-in specs.; COLLECT_GCC=gcc; COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/5/lto-wrapper; Target: x86_64-linux-gnu; Configured with: ../src/configure -v --with-pkgversion='Ubuntu 5.4.0-6ubuntu1~16.04.10' --with-bugurl=file:///usr/share/doc/gcc-5/README.Bugs --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-5 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-5-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-5-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-5-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu; Thread model: posix; gcc version 5.4.0 20160609 (Ubuntu 5.4.0-6ubuntu1~16.04.10) ; ", "glibc_version": "2.23", "hostname": "tud277526", "install_size": 2606, "modules_tool": ('Lmod', '/software/lmod/7.8/libexec/lmod', '7.8'), "os_name": "ubuntu", "os_type": "Linux", "os_version": "16.04", "platform_name": "x86_64-unknown-linux", "python_version": "2.7.12 (default, Dec 4 2017, 14:50:18) ; [GCC 5.4.0 20160609]", "system_gcc_path": "/usr/bin/gcc", "system_python_path": "/usr/bin/python", "timestamp": 1534246484, "total_memory": 64368, }] # Build statistics buildstats = [ { "build_time": 0.76, "command_line": ["--buildpath='/software/easybuild/build'", "--containerpath='/software/easybuild/containers'", "--installpath='/software/easybuild'", "--packagepath='/software/easybuild/packages'", "--prefix='/software/easybuild'", "--repositorypath='/software/easybuild/ebfiles_repo'", "--robot='/software/easybuild/ebfiles_repo:/software/easybuild/software/EasyBuild/3.6.2/lib/python2.7/site-packages/easybuild_easyconfigs-3.6.2-py2.7.egg/easybuild/easyconfigs'", "--robot-paths='/software/easybuild/ebfiles_repo:'", "--sourcepath='/software/easybuild/sources'", './ClangGCC-2017b.eb'], "core_count": 8, "cpu_model": "Intel(R) Xeon(R) CPU E5-1620 v2 @ 3.70GHz", "cpu_speed": 3900.0, "cpu_vendor": "Intel", "easybuild-easyblocks_version": "3.6.2", "easybuild-framework_version": "3.6.2", "gcc_version": "Using built-in specs.; COLLECT_GCC=gcc; COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/5/lto-wrapper; Target: x86_64-linux-gnu; Configured with: ../src/configure -v --with-pkgversion='Ubuntu 5.4.0-6ubuntu1~16.04.10' --with-bugurl=file:///usr/share/doc/gcc-5/README.Bugs --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-5 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-5-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-5-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-5-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu; Thread model: posix; gcc version 5.4.0 20160609 (Ubuntu 5.4.0-6ubuntu1~16.04.10) ; ", "glibc_version": "2.23", "hostname": "tud277526", "install_size": 2606, "modules_tool": ('Lmod', '/software/lmod/7.8/libexec/lmod', '7.8'), "os_name": "ubuntu", "os_type": "Linux", "os_version": "16.04", "platform_name": "x86_64-unknown-linux", "python_version": "2.7.12 (default, Dec 4 2017, 14:50:18) ; [GCC 5.4.0 20160609]", "system_gcc_path": "/usr/bin/gcc", "system_python_path": "/usr/bin/python", "timestamp": 1534246484, "total_memory": 64368, }, { "build_time": 0.79, "command_line": ["--buildpath='/software/easybuild/build'", "--containerpath='/software/easybuild/containers'", '--force', "--installpath='/software/easybuild'", "--packagepath='/software/easybuild/packages'", "--prefix='/software/easybuild'", "--repositorypath='/software/easybuild/ebfiles_repo'", "--robot='/software/easybuild/ebfiles_repo:/software/easybuild/software/EasyBuild/3.6.2/lib/python2.7/site-packages/easybuild_easyconfigs-3.6.2-py2.7.egg/easybuild/easyconfigs'", "--robot-paths='/software/easybuild/ebfiles_repo:'", "--sourcepath='/software/easybuild/sources'", './ClangGCC-2017b.eb'], "core_count": 8, "cpu_model": "Intel(R) Xeon(R) CPU E5-1620 v2 @ 3.70GHz", "cpu_speed": 3900.0, "cpu_vendor": "Intel", "easybuild-easyblocks_version": "3.6.2", "easybuild-framework_version": "3.6.2", "gcc_version": "Using built-in specs.; 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Clang will use libstdc++. GFortran will be used to compile Fortran code. (type: <type 'str'>) == 2018-09-20 11:58:45,503 easyconfig.py:470 INFO Validating easyconfig == 2018-09-20 11:58:45,503 easyconfig.py:475 INFO Checking OS dependencies == 2018-09-20 11:58:45,503 easyconfig.py:530 INFO OS dependencies ok: [] == 2018-09-20 11:58:45,504 easyconfig.py:480 INFO Checking skipsteps == 2018-09-20 11:58:45,504 easyconfig.py:485 INFO Checking build option lists == 2018-09-20 11:58:45,504 easyconfig.py:488 INFO Checking licenses == 2018-09-20 11:58:45,591 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '') == 2018-09-20 11:58:45,591 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') == 2018-09-20 11:58:45,664 build_log.py:233 INFO resolving dependencies ... == 2018-09-20 11:58:45,742 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '') == 2018-09-20 11:58:45,742 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') == 2018-09-20 11:58:45,744 robot.py:353 INFO Dependency resolution complete, building as follows: [{'short_mod_name': 'OpenMPI/2.1.1-ClangGCC-2017b', 'full_mod_name': 'OpenMPI/2.1.1-ClangGCC-2017b', 'ec': <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7f346499c5d0>, 'dependencies': [], 'hiddendependencies': [], 'hidden': False, 'spec': '/home/vwkoppejan/Downloads/OpenMPI-2.1.1-ClangGCC-2017b.eb', 'builddependencies': []}] == 2018-09-20 11:58:45,744 hooks.py:100 INFO No location for hooks implementation provided, no hooks defined == 2018-09-20 11:58:45,744 hooks.py:128 INFO Defined hooks verified, all known hooks: == 2018-09-20 11:58:45,745 build_log.py:233 INFO processing EasyBuild easyconfig /home/vwkoppejan/Downloads/OpenMPI-2.1.1-ClangGCC-2017b.eb == 2018-09-20 11:58:45,745 easyblock.py:2734 INFO Resetting environment == 2018-09-20 11:58:45,745 environment.py:118 INFO Unsetting environment variable PYTHONOPTIMIZE (value: 1) == 2018-09-20 11:58:45,745 environment.py:118 INFO Unsetting environment variable PYTHONPATH (value: /software/easybuild/software/EasyBuild/3.6.2/lib/python2.7/site-packages) == 2018-09-20 11:58:45,746 easyconfig.py:1096 INFO Derived full easyblock module path for ConfigureMake: easybuild.easyblocks.generic.configuremake == 2018-09-20 11:58:45,746 easyconfig.py:1142 INFO Successfully obtained class 'ConfigureMake' for easyblock 'ConfigureMake' (software name 'OpenMPI') == 2018-09-20 11:58:45,747 easyblock.py:266 INFO This is EasyBuild 3.6.2 (framework: 3.6.2, easyblocks: 3.6.2) on host tud277526. == 2018-09-20 11:58:45,747 easyblock.py:272 INFO This is easyblock ConfigureMake from module easybuild.easyblocks.generic.configuremake (/software/easybuild/software/EasyBuild/3.6.2/lib/python2.7/site-packages/easybuild_easyblocks-3.6.2-py2.7.egg/easybuild/easyblocks/generic/configuremake.pyo) == 2018-09-20 11:58:45,747 easyblock.py:818 INFO Build dir set to /software/easybuild/build/OpenMPI/2.1.1/ClangGCC-2017b == 2018-09-20 11:58:45,748 easyblock.py:859 INFO Software install dir set to /software/easybuild/software/OpenMPI/2.1.1-ClangGCC-2017b == 2018-09-20 11:58:45,748 easyblock.py:864 INFO Module install dir set to /software/easybuild/modules/all == 2018-09-20 11:58:45,748 easyblock.py:251 INFO Init completed for application name OpenMPI version 2.1.1 == 2018-09-20 11:58:45,748 easyblock.py:2750 INFO Obtained application instance of for OpenMPI (easyblock: ConfigureMake) == 2018-09-20 11:58:45,748 build_log.py:233 INFO building and installing OpenMPI/2.1.1-ClangGCC-2017b... == 2018-09-20 11:58:45,749 build_log.py:233 INFO fetching files... == 2018-09-20 11:58:45,749 easyblock.py:2528 INFO Starting fetch step == 2018-09-20 11:58:45,749 easyblock.py:2534 INFO Running method fetch_step part of step fetch == 2018-09-20 11:58:45,749 easyblock.py:1577 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version == 2018-09-20 11:58:45,750 filetools.py:343 INFO Command eb found at /software/easybuild/software/EasyBuild/3.6.2/bin/eb == 2018-09-20 11:58:45,750 easyblock.py:649 INFO Found file openmpi-2.1.1.tar.gz at /software/easybuild/sources/o/OpenMPI/openmpi-2.1.1.tar.gz == 2018-09-20 11:58:45,750 easyblock.py:378 INFO Added sources: [{'path': '/software/easybuild/sources/o/OpenMPI/openmpi-2.1.1.tar.gz', 'cmd': None, 'finalpath': '/software/easybuild/build/OpenMPI/2.1.1/ClangGCC-2017b', 'name': 'openmpi-2.1.1.tar.gz', 'checksum': 'afe4bef3c4378bc76eea96c623d5aa4c1c98b9e057d281c646e68869292a77dc'}] == 2018-09-20 11:58:45,750 easyblock.py:1618 INFO no patches provided == 2018-09-20 11:58:45,778 easyblock.py:1628 INFO md5 checksum for /software/easybuild/sources/o/OpenMPI/openmpi-2.1.1.tar.gz: bee36445ad1ef452a378f446f054804d == 2018-09-20 11:58:45,825 easyblock.py:1628 INFO sha256 checksum for /software/easybuild/sources/o/OpenMPI/openmpi-2.1.1.tar.gz: afe4bef3c4378bc76eea96c623d5aa4c1c98b9e057d281c646e68869292a77dc == 2018-09-20 11:58:45,826 easyblock.py:1661 INFO Checking dirs that need to be created: ['/software/easybuild/software/OpenMPI/2.1.1-ClangGCC-2017b', '/software/easybuild/modules/all/OpenMPI', '/software/easybuild/modules/mpi/OpenMPI'] == 2018-09-20 11:58:45,826 build_log.py:233 INFO creating build dir, resetting environment... == 2018-09-20 11:58:45,826 easyblock.py:2528 INFO Starting ready step == 2018-09-20 11:58:45,826 easyblock.py:2534 INFO Running method check_readiness_step part of step ready == 2018-09-20 11:58:45,827 run.py:192 INFO running cmd: ulimit -u == 2018-09-20 11:58:45,830 easyblock.py:1517 INFO Setting parallelism: 8 == 2018-09-20 11:58:45,861 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '') == 2018-09-20 11:58:45,861 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') == 2018-09-20 11:58:45,861 easyblock.py:1522 WARNING Loaded modules detected: ['EasyBuild/3.6.2'] == 2018-09-20 11:58:45,941 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '') == 2018-09-20 11:58:45,942 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') == 2018-09-20 11:58:45,942 easyblock.py:2534 INFO Running method make_builddir part of step ready == 2018-09-20 11:58:45,943 easyblock.py:884 INFO Found old directory /software/easybuild/build/OpenMPI/2.1.1/ClangGCC-2017b == 2018-09-20 11:58:46,069 filetools.py:1204 INFO Path /software/easybuild/build/OpenMPI/2.1.1/ClangGCC-2017b successfully removed. == 2018-09-20 11:58:46,069 easyblock.py:891 INFO Removed old directory /software/easybuild/build/OpenMPI/2.1.1/ClangGCC-2017b == 2018-09-20 11:58:46,069 filetools.py:1108 INFO Creating directory /software/easybuild/build/OpenMPI/2.1.1/ClangGCC-2017b (parents: True, set_gid: False, sticky: False) == 2018-09-20 11:58:46,070 easyblock.py:2534 INFO Running method env_reset_changes part of step ready == 2018-09-20 11:58:46,070 easyblock.py:2534 INFO Running method handle_iterate_opts part of step ready == 2018-09-20 11:58:46,070 build_log.py:233 INFO unpacking... == 2018-09-20 11:58:46,070 easyblock.py:2528 INFO Starting source step == 2018-09-20 11:58:46,070 easyblock.py:2534 INFO Running method checksum_step part of step source == 2018-09-20 11:58:46,119 easyblock.py:1675 INFO Checksum verification for /software/easybuild/sources/o/OpenMPI/openmpi-2.1.1.tar.gz using afe4bef3c4378bc76eea96c623d5aa4c1c98b9e057d281c646e68869292a77dc passed. == 2018-09-20 11:58:46,119 easyblock.py:2534 INFO Running method extract_step part of step source == 2018-09-20 11:58:46,119 easyblock.py:1686 INFO Unpacking source openmpi-2.1.1.tar.gz == 2018-09-20 11:58:46,120 run.py:192 INFO running cmd: tar xzf /software/easybuild/sources/o/OpenMPI/openmpi-2.1.1.tar.gz == 2018-09-20 11:58:46,528 build_log.py:233 INFO patching... == 2018-09-20 11:58:46,528 easyblock.py:2528 INFO Starting patch step == 2018-09-20 11:58:46,528 easyblock.py:2534 INFO Running method patch_step part of step patch == 2018-09-20 11:58:46,528 build_log.py:233 INFO preparing... == 2018-09-20 11:58:46,529 easyblock.py:2528 INFO Starting prepare step == 2018-09-20 11:58:46,529 easyblock.py:2534 INFO Running method prepare_step part of step prepare == 2018-09-20 11:58:46,637 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '') == 2018-09-20 11:58:46,638 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') == 2018-09-20 11:58:46,720 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /software/easybuild/software/Clang/5.0.0-GCC-6.4.0-2.28/lib:/software/easybuild/software/GMP/6.1.2-GCCcore-6.4.0/lib:/software/easybuild/software/binutils/2.28-GCCcore-6.4.0/lib:/software/easybuild/software/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0:/software/easybuild/software/GCCcore/6.4.0/lib64:/software/easybuild/software/GCCcore/6.4.0/lib (previous value: '/software/easybuild/software/Clang/5.0.0-GCC-6.4.0-2.28/lib:/software/easybuild/software/GMP/6.1.2-GCCcore-6.4.0/lib:/software/easybuild/software/binutils/2.28-GCCcore-6.4.0/lib:/software/easybuild/software/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0:/software/easybuild/software/GCCcore/6.4.0/lib64:/software/easybuild/software/GCCcore/6.4.0/lib') == 2018-09-20 11:58:46,721 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') == 2018-09-20 11:58:46,766 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /software/easybuild/software/Clang/5.0.0-GCC-6.4.0-2.28/lib:/software/easybuild/software/GMP/6.1.2-GCCcore-6.4.0/lib:/software/easybuild/software/binutils/2.28-GCCcore-6.4.0/lib:/software/easybuild/software/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0:/software/easybuild/software/GCCcore/6.4.0/lib64:/software/easybuild/software/GCCcore/6.4.0/lib (previous value: '/software/easybuild/software/Clang/5.0.0-GCC-6.4.0-2.28/lib:/software/easybuild/software/GMP/6.1.2-GCCcore-6.4.0/lib:/software/easybuild/software/binutils/2.28-GCCcore-6.4.0/lib:/software/easybuild/software/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0:/software/easybuild/software/GCCcore/6.4.0/lib64:/software/easybuild/software/GCCcore/6.4.0/lib') == 2018-09-20 11:58:46,766 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') == 2018-09-20 11:58:46,852 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /software/easybuild/software/hwloc/1.11.7-GCCcore-6.4.0/lib:/software/easybuild/software/numactl/2.0.11-GCCcore-6.4.0/lib:/software/easybuild/software/Clang/5.0.0-GCC-6.4.0-2.28/lib:/software/easybuild/software/GMP/6.1.2-GCCcore-6.4.0/lib:/software/easybuild/software/binutils/2.28-GCCcore-6.4.0/lib:/software/easybuild/software/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0:/software/easybuild/software/GCCcore/6.4.0/lib64:/software/easybuild/software/GCCcore/6.4.0/lib (previous value: '/software/easybuild/software/hwloc/1.11.7-GCCcore-6.4.0/lib:/software/easybuild/software/numactl/2.0.11-GCCcore-6.4.0/lib') == 2018-09-20 11:58:46,853 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') == 2018-09-20 11:58:46,854 toolchain.py:616 INFO List of toolchain dependency modules and toolchain definition match! == 2018-09-20 11:58:46,856 options.py:90 WARNING option: option with name _opt_CC returns None == 2018-09-20 11:58:46,856 options.py:90 WARNING option: option with name _opt_CXX returns None == 2018-09-20 11:58:46,856 options.py:90 WARNING option: option with name _opt_F77 returns None == 2018-09-20 11:58:46,856 options.py:90 WARNING option: option with name _opt_F90 returns None == 2018-09-20 11:58:46,857 options.py:90 WARNING option: option with name _opt_FC returns None == 2018-09-20 11:58:46,857 compiler.py:334 INFO _set_optimal_architecture: using march=native as optarch for x86_64. == 2018-09-20 11:58:46,860 variables.py:201 WARNING flags_for_subdirs: directory /software/easybuild/software/hwloc/1.11.7-GCCcore-6.4.0/lib64 was not found == 2018-09-20 11:58:46,861 environment.py:97 INFO Environment variable CC set to clang (previously undefined) == 2018-09-20 11:58:46,861 environment.py:97 INFO Environment variable EBVARCC set to clang (previously undefined) == 2018-09-20 11:58:46,861 environment.py:97 INFO Environment variable CFLAGS set to -O2 -march=native (previously undefined) == 2018-09-20 11:58:46,861 environment.py:97 INFO Environment variable EBVARCFLAGS set to -O2 -march=native (previously undefined) == 2018-09-20 11:58:46,861 environment.py:97 INFO Environment variable CPPFLAGS set to -I/software/easybuild/software/hwloc/1.11.7-GCCcore-6.4.0/include (previously undefined) == 2018-09-20 11:58:46,861 environment.py:97 INFO Environment variable EBVARCPPFLAGS set to -I/software/easybuild/software/hwloc/1.11.7-GCCcore-6.4.0/include (previously undefined) == 2018-09-20 11:58:46,861 environment.py:97 INFO Environment variable CXX set to clang++ (previously undefined) == 2018-09-20 11:58:46,861 environment.py:97 INFO Environment variable EBVARCXX set to clang++ (previously undefined) == 2018-09-20 11:58:46,862 environment.py:97 INFO Environment variable CXXFLAGS set to -O2 -march=native (previously undefined) == 2018-09-20 11:58:46,862 environment.py:97 INFO Environment variable EBVARCXXFLAGS set to -O2 -march=native (previously undefined) == 2018-09-20 11:58:46,862 environment.py:97 INFO Environment variable F77 set to gfortran (previously undefined) == 2018-09-20 11:58:46,862 environment.py:97 INFO Environment variable EBVARF77 set to gfortran (previously undefined) == 2018-09-20 11:58:46,862 environment.py:97 INFO Environment variable F90 set to gfortran (previously undefined) == 2018-09-20 11:58:46,862 environment.py:97 INFO Environment variable EBVARF90 set to gfortran (previously undefined) == 2018-09-20 11:58:46,862 environment.py:97 INFO Environment variable F90FLAGS set to -O2 -march=native (previously undefined) == 2018-09-20 11:58:46,862 environment.py:97 INFO Environment variable EBVARF90FLAGS set to -O2 -march=native (previously undefined) == 2018-09-20 11:58:46,862 environment.py:97 INFO Environment variable FC set to gfortran (previously undefined) == 2018-09-20 11:58:46,862 environment.py:97 INFO Environment variable EBVARFC set to gfortran (previously undefined) == 2018-09-20 11:58:46,863 environment.py:97 INFO Environment variable FCFLAGS set to -O2 -march=native (previously undefined) == 2018-09-20 11:58:46,863 environment.py:97 INFO Environment variable EBVARFCFLAGS set to -O2 -march=native (previously undefined) == 2018-09-20 11:58:46,863 environment.py:97 INFO Environment variable FFLAGS set to -O2 -march=native (previously undefined) == 2018-09-20 11:58:46,863 environment.py:97 INFO Environment variable EBVARFFLAGS set to -O2 -march=native (previously undefined) == 2018-09-20 11:58:46,863 environment.py:97 INFO Environment variable FLIBS set to -lgfortran (previously undefined) == 2018-09-20 11:58:46,863 environment.py:97 INFO Environment variable EBVARFLIBS set to -lgfortran (previously undefined) == 2018-09-20 11:58:46,863 environment.py:97 INFO Environment variable LDFLAGS set to -L/software/easybuild/software/GCCcore/6.4.0/lib64 -L/software/easybuild/software/GCCcore/6.4.0/lib -L/software/easybuild/software/hwloc/1.11.7-GCCcore-6.4.0/lib (previously undefined) == 2018-09-20 11:58:46,863 environment.py:97 INFO Environment variable EBVARLDFLAGS set to -L/software/easybuild/software/GCCcore/6.4.0/lib64 -L/software/easybuild/software/GCCcore/6.4.0/lib -L/software/easybuild/software/hwloc/1.11.7-GCCcore-6.4.0/lib (previously undefined) == 2018-09-20 11:58:46,863 environment.py:97 INFO Environment variable LIBS set to -lm -lpthread (previously undefined) == 2018-09-20 11:58:46,864 environment.py:97 INFO Environment variable EBVARLIBS set to -lm -lpthread (previously undefined) == 2018-09-20 11:58:46,864 environment.py:97 INFO Environment variable OPTFLAGS set to -O2 -march=native (previously undefined) == 2018-09-20 11:58:46,864 environment.py:97 INFO Environment variable EBVAROPTFLAGS set to -O2 -march=native (previously undefined) == 2018-09-20 11:58:46,864 environment.py:97 INFO Environment variable PRECFLAGS set to (previously undefined) == 2018-09-20 11:58:46,864 environment.py:97 INFO Environment variable EBVARPRECFLAGS set to (previously undefined) == 2018-09-20 11:58:46,864 easyblock.py:1442 INFO Using /software/easybuild/build/OpenMPI/2.1.1/ClangGCC-2017b/openmpi-2.1.1/ as start dir == 2018-09-20 11:58:46,864 build_log.py:233 INFO configuring... == 2018-09-20 11:58:46,864 easyblock.py:2528 INFO Starting configure step == 2018-09-20 11:58:46,865 easyblock.py:2534 INFO Running method configure_step part of step configure == 2018-09-20 11:58:46,865 run.py:192 INFO running cmd: ./configure --prefix=/software/easybuild/software/OpenMPI/2.1.1-ClangGCC-2017b --enable-shared --enable-mpi-thread-multiple --with-verbs --enable-mpirun-prefix-by-default --with-hwloc=$EBROOTHWLOC --without-ucx == 2018-09-20 11:58:47,340 build_log.py:158 ERROR EasyBuild crashed with an error (at easybuild/software/EasyBuild/3.6.2/lib/python2.7/site-packages/vsc_base-2.8.3-py2.7.egg/vsc/utils/exceptions.py:124 in __init__): cmd " ./configure --prefix=/software/easybuild/software/OpenMPI/2.1.1-ClangGCC-2017b --enable-shared --enable-mpi-thread-multiple --with-verbs --enable-mpirun-prefix-by-default --with-hwloc=$EBROOTHWLOC --without-ucx " exited with exit code 77 and output: checking for perl... perl ============================================================================ == Configuring Open MPI ============================================================================ *** Startup tests checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking target system type... x86_64-unknown-linux-gnu checking for gcc... clang checking whether the C compiler works... no configure: error: in `/software/easybuild/build/OpenMPI/2.1.1/ClangGCC-2017b/openmpi-2.1.1': configure: error: C compiler cannot create executables See `config.log' for more details (at easybuild/software/EasyBuild/3.6.2/lib/python2.7/site-packages/easybuild_framework-3.6.2-py2.7.egg/easybuild/tools/run.py:501 in parse_cmd_output) == 2018-09-20 11:58:47,340 easyblock.py:2776 WARNING build failed (first 300 chars): cmd " ./configure --prefix=/software/easybuild/software/OpenMPI/2.1.1-ClangGCC-2017b --enable-shared --enable-mpi-thread-multiple --with-verbs --enable-mpirun-prefix-by-default --with-hwloc=$EBROOTHWLOC --without-ucx " exited with exit code 77 and output: checking for perl... perl ================= == 2018-09-20 11:58:47,341 easyblock.py:281 INFO Closing log for application name OpenMPI version 2.1.1 == 2018-09-20 11:58:47,341 easyblock.py:281 INFO Closing log for application name OpenMPI version 2.1.1 == 2018-09-20 11:58:47,341 build_log.py:233 INFO FAILED: Installation ended unsuccessfully (build directory: /software/easybuild/build/OpenMPI/2.1.1/ClangGCC-2017b): build failed (first 300 chars): cmd " ./configure --prefix=/software/easybuild/software/OpenMPI/2.1.1-ClangGCC-2017b --enable-shared --enable-mpi-thread-multiple --with-verbs --enable-mpirun-prefix-by-default --with-hwloc=$EBROOTHWLOC --without-ucx " exited with exit code 77 and output: checking for perl... perl ================= == 2018-09-20 11:58:47,341 build_log.py:233 INFO Results of the build can be found in the log file(s) /tmp/eb-D2HGAG/easybuild-OpenMPI-2.1.1-20180920.115845.qzhUz.log == 2018-09-20 11:58:47,342 build_log.py:158 ERROR EasyBuild crashed with an error (at easybuild/software/EasyBuild/3.6.2/lib/python2.7/site-packages/vsc_base-2.8.3-py2.7.egg/vsc/utils/exceptions.py:124 in __init__): build failed (first 300 chars): cmd " ./configure --prefix=/software/easybuild/software/OpenMPI/2.1.1-ClangGCC-2017b --enable-shared --enable-mpi-thread-multiple --with-verbs --enable-mpirun-prefix-by-default --with-hwloc=$EBROOTHWLOC --without-ucx " exited with exit code 77 and output: checking for perl... perl ================= (at easybuild/software/EasyBuild/3.6.2/lib/python2.7/site-packages/easybuild_framework-3.6.2-py2.7.egg/easybuild/main.py:132 in build_and_install_software) == 2018-09-20 11:58:47,342 build_log.py:158 ERROR EasyBuild crashed with an error (at easybuild/software/EasyBuild/3.6.2/lib/python2.7/site-packages/vsc_base-2.8.3-py2.7.egg/vsc/utils/exceptions.py:124 in __init__): Build of /home/vwkoppejan/Downloads/OpenMPI-2.1.1-ClangGCC-2017b.eb failed (err: 'build failed (first 300 chars): cmd " ./configure --prefix=/software/easybuild/software/OpenMPI/2.1.1-ClangGCC-2017b --enable-shared --enable-mpi-thread-multiple --with-verbs --enable-mpirun-prefix-by-default --with-hwloc=$EBROOTHWLOC --without-ucx " exited with exit code 77 and output:\nchecking for perl... perl\n\n=================') (at easybuild/software/EasyBuild/3.6.2/lib/python2.7/site-packages/easybuild_framework-3.6.2-py2.7.egg/easybuild/main.py:164 in build_and_install_software)
== 2018-09-20 11:58:45,747 easyblock.py:266 INFO This is EasyBuild 3.6.2 (framework: 3.6.2, easyblocks: 3.6.2) on host tud277526. == 2018-09-20 11:58:45,747 easyblock.py:272 INFO This is easyblock ConfigureMake from module easybuild.easyblocks.generic.configuremake (/software/easybuild/software/EasyBuild/3.6.2/lib/python2.7/site-packages/easybuild_easyblocks-3.6.2-py2.7.egg/easybuild/easyblocks/generic/configuremake.pyo) == 2018-09-20 11:58:45,747 easyblock.py:818 INFO Build dir set to /software/easybuild/build/OpenMPI/2.1.1/ClangGCC-2017b == 2018-09-20 11:58:45,748 easyblock.py:859 INFO Software install dir set to /software/easybuild/software/OpenMPI/2.1.1-ClangGCC-2017b == 2018-09-20 11:58:45,748 easyblock.py:864 INFO Module install dir set to /software/easybuild/modules/all == 2018-09-20 11:58:45,748 easyblock.py:251 INFO Init completed for application name OpenMPI version 2.1.1 == 2018-09-20 11:58:45,748 easyblock.py:2750 INFO Obtained application instance of for OpenMPI (easyblock: ConfigureMake) == 2018-09-20 11:58:45,748 build_log.py:233 INFO building and installing OpenMPI/2.1.1-ClangGCC-2017b... == 2018-09-20 11:58:45,749 build_log.py:233 INFO fetching files... == 2018-09-20 11:58:45,749 easyblock.py:2528 INFO Starting fetch step == 2018-09-20 11:58:45,749 easyblock.py:2534 INFO Running method fetch_step part of step fetch == 2018-09-20 11:58:45,749 easyblock.py:1577 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version == 2018-09-20 11:58:45,750 filetools.py:343 INFO Command eb found at /software/easybuild/software/EasyBuild/3.6.2/bin/eb == 2018-09-20 11:58:45,750 easyblock.py:649 INFO Found file openmpi-2.1.1.tar.gz at /software/easybuild/sources/o/OpenMPI/openmpi-2.1.1.tar.gz == 2018-09-20 11:58:45,750 easyblock.py:378 INFO Added sources: [{'path': '/software/easybuild/sources/o/OpenMPI/openmpi-2.1.1.tar.gz', 'cmd': None, 'finalpath': '/software/easybuild/build/OpenMPI/2.1.1/ClangGCC-2017b', 'name': 'openmpi-2.1.1.tar.gz', 'checksum': 'afe4bef3c4378bc76eea96c623d5aa4c1c98b9e057d281c646e68869292a77dc'}] == 2018-09-20 11:58:45,750 easyblock.py:1618 INFO no patches provided == 2018-09-20 11:58:45,778 easyblock.py:1628 INFO md5 checksum for /software/easybuild/sources/o/OpenMPI/openmpi-2.1.1.tar.gz: bee36445ad1ef452a378f446f054804d == 2018-09-20 11:58:45,825 easyblock.py:1628 INFO sha256 checksum for /software/easybuild/sources/o/OpenMPI/openmpi-2.1.1.tar.gz: afe4bef3c4378bc76eea96c623d5aa4c1c98b9e057d281c646e68869292a77dc == 2018-09-20 11:58:45,826 easyblock.py:1661 INFO Checking dirs that need to be created: ['/software/easybuild/software/OpenMPI/2.1.1-ClangGCC-2017b', '/software/easybuild/modules/all/OpenMPI', '/software/easybuild/modules/mpi/OpenMPI'] == 2018-09-20 11:58:45,826 build_log.py:233 INFO creating build dir, resetting environment... == 2018-09-20 11:58:45,826 easyblock.py:2528 INFO Starting ready step == 2018-09-20 11:58:45,826 easyblock.py:2534 INFO Running method check_readiness_step part of step ready == 2018-09-20 11:58:45,827 run.py:192 INFO running cmd: ulimit -u == 2018-09-20 11:58:45,830 easyblock.py:1517 INFO Setting parallelism: 8 == 2018-09-20 11:58:45,861 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '') == 2018-09-20 11:58:45,861 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') == 2018-09-20 11:58:45,861 easyblock.py:1522 WARNING Loaded modules detected: ['EasyBuild/3.6.2'] == 2018-09-20 11:58:45,941 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '') == 2018-09-20 11:58:45,942 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') == 2018-09-20 11:58:45,942 easyblock.py:2534 INFO Running method make_builddir part of step ready == 2018-09-20 11:58:45,943 easyblock.py:884 INFO Found old directory /software/easybuild/build/OpenMPI/2.1.1/ClangGCC-2017b == 2018-09-20 11:58:46,069 filetools.py:1204 INFO Path /software/easybuild/build/OpenMPI/2.1.1/ClangGCC-2017b successfully removed. == 2018-09-20 11:58:46,069 easyblock.py:891 INFO Removed old directory /software/easybuild/build/OpenMPI/2.1.1/ClangGCC-2017b == 2018-09-20 11:58:46,069 filetools.py:1108 INFO Creating directory /software/easybuild/build/OpenMPI/2.1.1/ClangGCC-2017b (parents: True, set_gid: False, sticky: False) == 2018-09-20 11:58:46,070 easyblock.py:2534 INFO Running method env_reset_changes part of step ready == 2018-09-20 11:58:46,070 easyblock.py:2534 INFO Running method handle_iterate_opts part of step ready == 2018-09-20 11:58:46,070 build_log.py:233 INFO unpacking... == 2018-09-20 11:58:46,070 easyblock.py:2528 INFO Starting source step == 2018-09-20 11:58:46,070 easyblock.py:2534 INFO Running method checksum_step part of step source == 2018-09-20 11:58:46,119 easyblock.py:1675 INFO Checksum verification for /software/easybuild/sources/o/OpenMPI/openmpi-2.1.1.tar.gz using afe4bef3c4378bc76eea96c623d5aa4c1c98b9e057d281c646e68869292a77dc passed. == 2018-09-20 11:58:46,119 easyblock.py:2534 INFO Running method extract_step part of step source == 2018-09-20 11:58:46,119 easyblock.py:1686 INFO Unpacking source openmpi-2.1.1.tar.gz == 2018-09-20 11:58:46,120 run.py:192 INFO running cmd: tar xzf /software/easybuild/sources/o/OpenMPI/openmpi-2.1.1.tar.gz == 2018-09-20 11:58:46,528 build_log.py:233 INFO patching... == 2018-09-20 11:58:46,528 easyblock.py:2528 INFO Starting patch step == 2018-09-20 11:58:46,528 easyblock.py:2534 INFO Running method patch_step part of step patch == 2018-09-20 11:58:46,528 build_log.py:233 INFO preparing... == 2018-09-20 11:58:46,529 easyblock.py:2528 INFO Starting prepare step == 2018-09-20 11:58:46,529 easyblock.py:2534 INFO Running method prepare_step part of step prepare == 2018-09-20 11:58:46,637 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '') == 2018-09-20 11:58:46,638 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') == 2018-09-20 11:58:46,720 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /software/easybuild/software/Clang/5.0.0-GCC-6.4.0-2.28/lib:/software/easybuild/software/GMP/6.1.2-GCCcore-6.4.0/lib:/software/easybuild/software/binutils/2.28-GCCcore-6.4.0/lib:/software/easybuild/software/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0:/software/easybuild/software/GCCcore/6.4.0/lib64:/software/easybuild/software/GCCcore/6.4.0/lib (previous value: '/software/easybuild/software/Clang/5.0.0-GCC-6.4.0-2.28/lib:/software/easybuild/software/GMP/6.1.2-GCCcore-6.4.0/lib:/software/easybuild/software/binutils/2.28-GCCcore-6.4.0/lib:/software/easybuild/software/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0:/software/easybuild/software/GCCcore/6.4.0/lib64:/software/easybuild/software/GCCcore/6.4.0/lib') == 2018-09-20 11:58:46,721 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') == 2018-09-20 11:58:46,766 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /software/easybuild/software/Clang/5.0.0-GCC-6.4.0-2.28/lib:/software/easybuild/software/GMP/6.1.2-GCCcore-6.4.0/lib:/software/easybuild/software/binutils/2.28-GCCcore-6.4.0/lib:/software/easybuild/software/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0:/software/easybuild/software/GCCcore/6.4.0/lib64:/software/easybuild/software/GCCcore/6.4.0/lib (previous value: '/software/easybuild/software/Clang/5.0.0-GCC-6.4.0-2.28/lib:/software/easybuild/software/GMP/6.1.2-GCCcore-6.4.0/lib:/software/easybuild/software/binutils/2.28-GCCcore-6.4.0/lib:/software/easybuild/software/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0:/software/easybuild/software/GCCcore/6.4.0/lib64:/software/easybuild/software/GCCcore/6.4.0/lib') == 2018-09-20 11:58:46,766 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') == 2018-09-20 11:58:46,852 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /software/easybuild/software/hwloc/1.11.7-GCCcore-6.4.0/lib:/software/easybuild/software/numactl/2.0.11-GCCcore-6.4.0/lib:/software/easybuild/software/Clang/5.0.0-GCC-6.4.0-2.28/lib:/software/easybuild/software/GMP/6.1.2-GCCcore-6.4.0/lib:/software/easybuild/software/binutils/2.28-GCCcore-6.4.0/lib:/software/easybuild/software/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0:/software/easybuild/software/GCCcore/6.4.0/lib64:/software/easybuild/software/GCCcore/6.4.0/lib (previous value: '/software/easybuild/software/hwloc/1.11.7-GCCcore-6.4.0/lib:/software/easybuild/software/numactl/2.0.11-GCCcore-6.4.0/lib') == 2018-09-20 11:58:46,853 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') == 2018-09-20 11:58:46,854 toolchain.py:616 INFO List of toolchain dependency modules and toolchain definition match! == 2018-09-20 11:58:46,856 options.py:90 WARNING option: option with name _opt_CC returns None == 2018-09-20 11:58:46,856 options.py:90 WARNING option: option with name _opt_CXX returns None == 2018-09-20 11:58:46,856 options.py:90 WARNING option: option with name _opt_F77 returns None == 2018-09-20 11:58:46,856 options.py:90 WARNING option: option with name _opt_F90 returns None == 2018-09-20 11:58:46,857 options.py:90 WARNING option: option with name _opt_FC returns None == 2018-09-20 11:58:46,857 compiler.py:334 INFO _set_optimal_architecture: using march=native as optarch for x86_64. == 2018-09-20 11:58:46,860 variables.py:201 WARNING flags_for_subdirs: directory /software/easybuild/software/hwloc/1.11.7-GCCcore-6.4.0/lib64 was not found == 2018-09-20 11:58:46,861 environment.py:97 INFO Environment variable CC set to clang (previously undefined) == 2018-09-20 11:58:46,861 environment.py:97 INFO Environment variable EBVARCC set to clang (previously undefined) == 2018-09-20 11:58:46,861 environment.py:97 INFO Environment variable CFLAGS set to -O2 -march=native (previously undefined) == 2018-09-20 11:58:46,861 environment.py:97 INFO Environment variable EBVARCFLAGS set to -O2 -march=native (previously undefined) == 2018-09-20 11:58:46,861 environment.py:97 INFO Environment variable CPPFLAGS set to -I/software/easybuild/software/hwloc/1.11.7-GCCcore-6.4.0/include (previously undefined) == 2018-09-20 11:58:46,861 environment.py:97 INFO Environment variable EBVARCPPFLAGS set to -I/software/easybuild/software/hwloc/1.11.7-GCCcore-6.4.0/include (previously undefined) == 2018-09-20 11:58:46,861 environment.py:97 INFO Environment variable CXX set to clang++ (previously undefined) == 2018-09-20 11:58:46,861 environment.py:97 INFO Environment variable EBVARCXX set to clang++ (previously undefined) == 2018-09-20 11:58:46,862 environment.py:97 INFO Environment variable CXXFLAGS set to -O2 -march=native (previously undefined) == 2018-09-20 11:58:46,862 environment.py:97 INFO Environment variable EBVARCXXFLAGS set to -O2 -march=native (previously undefined) == 2018-09-20 11:58:46,862 environment.py:97 INFO Environment variable F77 set to gfortran (previously undefined) == 2018-09-20 11:58:46,862 environment.py:97 INFO Environment variable EBVARF77 set to gfortran (previously undefined) == 2018-09-20 11:58:46,862 environment.py:97 INFO Environment variable F90 set to gfortran (previously undefined) == 2018-09-20 11:58:46,862 environment.py:97 INFO Environment variable EBVARF90 set to gfortran (previously undefined) == 2018-09-20 11:58:46,862 environment.py:97 INFO Environment variable F90FLAGS set to -O2 -march=native (previously undefined) == 2018-09-20 11:58:46,862 environment.py:97 INFO Environment variable EBVARF90FLAGS set to -O2 -march=native (previously undefined) == 2018-09-20 11:58:46,862 environment.py:97 INFO Environment variable FC set to gfortran (previously undefined) == 2018-09-20 11:58:46,862 environment.py:97 INFO Environment variable EBVARFC set to gfortran (previously undefined) == 2018-09-20 11:58:46,863 environment.py:97 INFO Environment variable FCFLAGS set to -O2 -march=native (previously undefined) == 2018-09-20 11:58:46,863 environment.py:97 INFO Environment variable EBVARFCFLAGS set to -O2 -march=native (previously undefined) == 2018-09-20 11:58:46,863 environment.py:97 INFO Environment variable FFLAGS set to -O2 -march=native (previously undefined) == 2018-09-20 11:58:46,863 environment.py:97 INFO Environment variable EBVARFFLAGS set to -O2 -march=native (previously undefined) == 2018-09-20 11:58:46,863 environment.py:97 INFO Environment variable FLIBS set to -lgfortran (previously undefined) == 2018-09-20 11:58:46,863 environment.py:97 INFO Environment variable EBVARFLIBS set to -lgfortran (previously undefined) == 2018-09-20 11:58:46,863 environment.py:97 INFO Environment variable LDFLAGS set to -L/software/easybuild/software/GCCcore/6.4.0/lib64 -L/software/easybuild/software/GCCcore/6.4.0/lib -L/software/easybuild/software/hwloc/1.11.7-GCCcore-6.4.0/lib (previously undefined) == 2018-09-20 11:58:46,863 environment.py:97 INFO Environment variable EBVARLDFLAGS set to -L/software/easybuild/software/GCCcore/6.4.0/lib64 -L/software/easybuild/software/GCCcore/6.4.0/lib -L/software/easybuild/software/hwloc/1.11.7-GCCcore-6.4.0/lib (previously undefined) == 2018-09-20 11:58:46,863 environment.py:97 INFO Environment variable LIBS set to -lm -lpthread (previously undefined) == 2018-09-20 11:58:46,864 environment.py:97 INFO Environment variable EBVARLIBS set to -lm -lpthread (previously undefined) == 2018-09-20 11:58:46,864 environment.py:97 INFO Environment variable OPTFLAGS set to -O2 -march=native (previously undefined) == 2018-09-20 11:58:46,864 environment.py:97 INFO Environment variable EBVAROPTFLAGS set to -O2 -march=native (previously undefined) == 2018-09-20 11:58:46,864 environment.py:97 INFO Environment variable PRECFLAGS set to (previously undefined) == 2018-09-20 11:58:46,864 environment.py:97 INFO Environment variable EBVARPRECFLAGS set to (previously undefined) == 2018-09-20 11:58:46,864 easyblock.py:1442 INFO Using /software/easybuild/build/OpenMPI/2.1.1/ClangGCC-2017b/openmpi-2.1.1/ as start dir == 2018-09-20 11:58:46,864 build_log.py:233 INFO configuring... == 2018-09-20 11:58:46,864 easyblock.py:2528 INFO Starting configure step == 2018-09-20 11:58:46,865 easyblock.py:2534 INFO Running method configure_step part of step configure == 2018-09-20 11:58:46,865 run.py:192 INFO running cmd: ./configure --prefix=/software/easybuild/software/OpenMPI/2.1.1-ClangGCC-2017b --enable-shared --enable-mpi-thread-multiple --with-verbs --enable-mpirun-prefix-by-default --with-hwloc=$EBROOTHWLOC --without-ucx == 2018-09-20 11:58:47,340 build_log.py:158 ERROR EasyBuild crashed with an error (at easybuild/software/EasyBuild/3.6.2/lib/python2.7/site-packages/vsc_base-2.8.3-py2.7.egg/vsc/utils/exceptions.py:124 in __init__): cmd " ./configure --prefix=/software/easybuild/software/OpenMPI/2.1.1-ClangGCC-2017b --enable-shared --enable-mpi-thread-multiple --with-verbs --enable-mpirun-prefix-by-default --with-hwloc=$EBROOTHWLOC --without-ucx " exited with exit code 77 and output: checking for perl... perl ============================================================================ == Configuring Open MPI ============================================================================ *** Startup tests checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking target system type... x86_64-unknown-linux-gnu checking for gcc... clang checking whether the C compiler works... no configure: error: in `/software/easybuild/build/OpenMPI/2.1.1/ClangGCC-2017b/openmpi-2.1.1': configure: error: C compiler cannot create executables See `config.log' for more details (at easybuild/software/EasyBuild/3.6.2/lib/python2.7/site-packages/easybuild_framework-3.6.2-py2.7.egg/easybuild/tools/run.py:501 in parse_cmd_output) == 2018-09-20 11:58:47,340 easyblock.py:2776 WARNING build failed (first 300 chars): cmd " ./configure --prefix=/software/easybuild/software/OpenMPI/2.1.1-ClangGCC-2017b --enable-shared --enable-mpi-thread-multiple --with-verbs --enable-mpirun-prefix-by-default --with-hwloc=$EBROOTHWLOC --without-ucx " exited with exit code 77 and output: checking for perl... perl ================= == 2018-09-20 11:58:47,341 easyblock.py:281 INFO Closing log for application name OpenMPI version 2.1.1
#### Test result Build of /home/vwkoppejan/Downloads/OpenMPI-2.1.1-ClangGCC-2017b.eb failed (err: 'build failed (first 300 chars): cmd " ./configure --prefix=/software/easybuild/software/OpenMPI/2.1.1-ClangGCC-2017b --enable-shared --enable-mpi-thread-multiple --with-verbs --enable-mpirun-prefix-by-default --with-hwloc=$EBROOTHWLOC --without-ucx " exited with exit code 77 and output:\nchecking for perl... perl\n\n=================') #### Overview of tested easyconfigs (in order) * **FAIL (build issue)** _OpenMPI-2.1.1-ClangGCC-2017b.eb_ #### Time info * start: Thu, 20 Sep 2018 09:58:45 +0000 (UTC) * end: Thu, 20 Sep 2018 09:58:47 +0000 (UTC) #### EasyBuild info * easybuild-framework version: 3.6.2 * easybuild-easyblocks version: 3.6.2 * command line: ``` eb ./OpenMPI-2.1.1-ClangGCC-2017b.eb -r --info ``` * full configuration (includes defaults): ``` --allow-loaded-modules='EasyBuild' --buildpath='/software/easybuild/build' --check-ebroot-env-vars='warn' --cleanup-builddir --cleanup-easyconfigs --cleanup-tmpdir --color='auto' --container-type='singularity' --containerpath='/software/easybuild/containers' --default-opt-level='defaultopt' --detect-loaded-modules='warn' --disable-add-dummy-to-minimal-toolchains --disable-allow-modules-tool-mismatch --disable-allow-use-as-root-and-accept-consequences --disable-avail-cfgfile-constants --disable-avail-easyconfig-constants --disable-avail-easyconfig-licenses --disable-avail-easyconfig-params --disable-avail-easyconfig-templates --disable-avail-hooks --disable-avail-module-naming-schemes --disable-avail-modules-tools --disable-avail-repositories --disable-check-conflicts --disable-check-github --disable-check-style --disable-consider-archived-easyconfigs --disable-container-build-image --disable-containerize --disable-debug --disable-debug-lmod --disable-devel --disable-dry-run --disable-dry-run-short --disable-dump-autopep8 --disable-dump-env-script --disable-enforce-checksums --disable-experimental --disable-extended-dry-run --disable-fetch --disable-fixed-installdir-naming-scheme --disable-force --disable-group-writable-installdir --disable-hidden --disable-ignore-checksums --disable-ignore-osdeps --disable-install-github-token --disable-install-latest-eb-release --disable-job --disable-last-log --disable-list-toolchains --disable-logtostdout --disable-minimal-toolchains --disable-module-depends-on --disable-module-only --disable-new-pr --disable-package --disable-pretend --disable-preview-pr --disable-quiet --disable-read-only-installdir --disable-rebuild --disable-recursive-module-unload --disable-regtest --disable-rpath --disable-sequential --disable-set-default-module --disable-set-gid-bit --disable-show-config --disable-show-default-configfiles --disable-show-default-moduleclasses --disable-show-full-config --disable-skip --disable-skip-test-cases --disable-sticky-bit --disable-terse --disable-trace --disable-update-modules-tool-cache --disable-upload-test-report --disable-use-existing-modules --disable-verify-easyconfig-filenames --extended-dry-run-ignore-errors --ignore-dirs='.git,.svn' --include-easyblocks='' --include-module-naming-schemes='' --include-toolchains='' --info --installpath='/software/easybuild' --job-backend='GC3Pie' --job-max-jobs='0' --job-max-walltime='24' --job-output-dir='/home/vwkoppejan/Downloads' --job-polling-interval='30.0' --lib64-fallback-sanity-check --logfile-format='easybuild,easybuild-%(name)s-%(version)s-%(date)s.%(time)s.log' --max-fail-ratio-adjust-permissions='0.5' --module-naming-scheme='EasyBuildMNS' --module-syntax='Lua' --moduleclasses='base,bio,cae,chem,compiler,data,debugger,devel,geo,ide,lang,lib,math,mpi,numlib,perf,phys,system,toolchain,tools,vis' --modules-tool='Lmod' --mpi-tests --output-format='txt' --package-naming-scheme='EasyBuildPNS' --package-release='1' --package-tool-options='' --package-tool='fpm' --package-type='rpm' --packagepath='/software/easybuild/packages' --pr-target-account='easybuilders' --pr-target-branch='develop' --pr-target-repo='easybuild-easyconfigs' --prefix='/software/easybuild' --repository='FileRepository' --repositorypath='/software/easybuild/ebfiles_repo' --robot-paths='/software/easybuild/ebfiles_repo:' --robot='/software/easybuild/ebfiles_repo:/software/easybuild/software/EasyBuild/3.6.2/lib/python2.7/site-packages/easybuild_easyconfigs-3.6.2-py2.7.egg/easybuild/easyconfigs' --sourcepath='/software/easybuild/sources' --strict='warn' --subdir-modules='modules' --subdir-software='software' --suffix-modules-path='all' --use-ccache='False' --use-f90cache='False' ```` #### System info * _core count:_ 8 * _cpu model:_ Intel(R) Xeon(R) CPU E5-1620 v2 @ 3.70GHz * _cpu speed:_ 3900.0 * _cpu vendor:_ Intel * _gcc version:_ Using built-in specs.; COLLECT_GCC=gcc; COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/5/lto-wrapper; Target: x86_64-linux-gnu; Configured with: ../src/configure -v --with-pkgversion='Ubuntu 5.4.0-6ubuntu1~16.04.10' --with-bugurl=file:///usr/share/doc/gcc-5/README.Bugs --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-5 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-5-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-5-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-5-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu; Thread model: posix; gcc version 5.4.0 20160609 (Ubuntu 5.4.0-6ubuntu1~16.04.10) ; * _glibc version:_ 2.23 * _hostname:_ tud277526 * _os name:_ ubuntu * _os type:_ Linux * _os version:_ 16.04 * _platform name:_ x86_64-unknown-linux * _python version:_ 2.7.12 (default, Dec 4 2017, 14:50:18) ; [GCC 5.4.0 20160609] * _system gcc path:_ /usr/bin/gcc * _system python path:_ /usr/bin/python * _total memory:_ 64368 #### List of loaded modules * EasyBuild/3.6.2 #### Environment ``` AMPLXE_MORE_PIN_OPTIONS = -ifeellucky BASH_FUNC_ml%% = () { eval $($LMOD_DIR/ml_cmd "$@") } BASH_FUNC_module%% = () { eval $($LMOD_CMD bash "$@") && eval $(${LMOD_SETTARG_CMD:-:} -s sh) } CLUTTER_IM_MODULE = xim DBUS_SESSION_BUS_ADDRESS = unix:abstract=/tmp/dbus-iQfeBtfzuA DEFAULTS_PATH = /usr/share/gconf/gnome.default.path DESKTOP_SESSION = gnome DISPLAY = :1 EASYBUILD_INSTALLPATH = /software/easybuild EASYBUILD_PREFIX = /software/easybuild EASYBUILD_ROBOT_PATHS = /software/easybuild/ebfiles_repo: EBDEVELEASYBUILD = /software/easybuild/software/EasyBuild/3.6.2/easybuild/EasyBuild-3.6.2-easybuild-devel EBROOTEASYBUILD = /software/easybuild/software/EasyBuild/3.6.2 EBVERSIONEASYBUILD = 3.6.2 FANCYLOGGER_IGNORE_MPI4PY = 1 GCC_COLORS = error=01;31:warning=01;35:note=01;36:caret=01;32:locus=01:quote=01 GDMSESSION = gnome GNOME_DESKTOP_SESSION_ID = this-is-deprecated GNOME_KEYRING_CONTROL = GNOME_KEYRING_PID = GPG_AGENT_INFO = /home/vwkoppejan/.gnupg/S.gpg-agent:0:1 GTK_IM_MODULE = ibus GTK_MODULES = gail:atk-bridge HOME = /home/vwkoppejan IM_CONFIG_PHASE = 1 INSTANCE = GNOME INTEL_LICENSE_FILE = /home/vwkoppejan/license_files/intel.lic JOB = gnome-session LANG = en_US.UTF-8 LC_ADDRESS = nl_NL.UTF-8 LC_IDENTIFICATION = nl_NL.UTF-8 LC_MEASUREMENT = nl_NL.UTF-8 LC_MONETARY = nl_NL.UTF-8 LC_NAME = nl_NL.UTF-8 LC_NUMERIC = nl_NL.UTF-8 LC_PAPER = nl_NL.UTF-8 LC_TELEPHONE = nl_NL.UTF-8 LC_TIME = nl_NL.UTF-8 LESSCLOSE = /usr/bin/lesspipe %s %s LESSOPEN = | /usr/bin/lesspipe %s LMOD_CMD = /software/lmod/7.8/libexec/lmod LMOD_DIR = /software/lmod/lmod/libexec LMOD_PKG = /software/lmod/lmod LMOD_SETTARG_FULL_SUPPORT = no LMOD_VERSION = 7.8 LOADEDMODULES = EasyBuild/3.6.2 LOGNAME = vwkoppejan LPP_CHUNKSIZE = 1 LPP_DIR = /home/vwkoppejan/software/lpp/src LPP_NPROCS = 4 LS_COLORS = 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MANDATORY_PATH = /usr/share/gconf/gnome.mandatory.path MODULEPATH = /home/vwkoppejan/modules:/software/easybuild/modules/all MODULESHOME = /software/lmod/lmod PATH = /software/easybuild/software/EasyBuild/3.6.2/bin:/software/lmod/7.8/libexec:/home/vwkoppejan/bin:/home/vwkoppejan/.local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin PWD = /home/vwkoppejan/Downloads PYTHONOPTIMIZE = 1 PYTHONPATH = /software/easybuild/software/EasyBuild/3.6.2/lib/python2.7/site-packages QT4_IM_MODULE = xim QT_ACCESSIBILITY = 1 QT_IM_MODULE = ibus QT_LINUX_ACCESSIBILITY_ALWAYS_ON = 1 SESSIONTYPE = gnome-session SHELL = /bin/bash SHLVL = 2 SOFTWARE = /software SSH_AUTH_SOCK = /run/user/1000/keyring/ssh TERM = xterm-256color UPSTART_EVENTS = started starting UPSTART_INSTANCE = UPSTART_JOB = gnome-settings-daemon UPSTART_SESSION = unix:abstract=/com/ubuntu/upstart-session/1000/2206 USER = vwkoppejan USERNAME = vwkoppejan VTE_VERSION = 4205 WINDOWID = 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