Hi,
While installing iimpi file, we are getting an error with binutils showing
module already loaded. Many more software installation like intel/2018a ,
Python 3.6.4 etc showed same error. It is showing a linking error with zlib
file. How to resolve this error.
Following are the log file contents got from iimpi installation
temporary log file in case of crash
/tmp/jobs/snow/6234/eb-SX6mFh/easybuild-vCIfI1.log
WARNING: Found one or more non-allowed loaded (EasyBuild-generated) modules
in current environment:
* GCCcore/5.4.0
* GCCcore/5.4.0
* binutils/2.26-GCCcore-5.4.0
* numactl/2.0.11-GCC-5.4.0-2.26
* hwloc/1.11.3-GCC-5.4.0-2.26
* OpenMPI/1.10.3-GCC-5.4.0-2.26
* OpenBLAS/0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.1
* gompi/2016b
* FFTW/3.3.4-gompi-2016b
* ScaLAPACK/2.0.2-gompi-2016b-OpenBLAS-0.2.18-LAPACK-3.6.1
* foss/2016b
* zlib/1.2.11-foss-2016b
This is not recommended since it may affect the installation procedure(s)
performed by EasyBuild.
To make EasyBuild allow particular loaded modules, use the
--allow-loaded-modules configuration option.
To specify action to take when loaded modules are detected, use
--detect-loaded-modules={error,ignore,purge,unload,warn}.
See http://easybuild.readthedocs.io/en/latest/Detecting_loaded_modules.html
for more information.
== resolving dependencies ...
== processing EasyBuild easyconfig
/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_easyconfigs-3.5.0-py2.7.egg/easybuild/easyconfigs/b/binutils/binutils-2.28.eb
== building and installing binutils/2.28...
== fetching files...
== creating build dir, resetting environment...
== FAILED: Installation ended unsuccessfully (build directory:
/sNow/easybuild/centos/7.3.1611/Broadwell/build/binutils/2.28/dummy-):
build failed (first 300 chars): Module is already loaded (EBROOTBINUTILS is
set), installation cannot continue.
== Results of the build can be found in the log file(s)
/sNow/easybuild/tmp/easybuild-binutils-2.28-20190311.004052.fAtBQ.log
ERROR: Build of
/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_easyconfigs-3.5.0-py2.7.egg/easybuild/easyconfigs/b/binutils/binutils-2.28.eb
failed (err: 'build failed (first 300 chars): Module is already loaded
(EBROOTBINUTILS is set), installation cannot continue.')
snow@sny02
:/sNow/easybuild/software/EasyBuild/3.2.1/lib/python2.7/site-packages/easybuild_easyconfigs-3.2.1-py2.7.egg/easybuild/easyconfigs/i/
iimpi$ cat
/sNow/easybuild/tmp/easybuild-binutils-2.28-20190311.004052.fAtBQ.log
== 2019-03-11 00:40:52,830 easyblock.py:264 INFO This is EasyBuild 3.5.0
(framework: 3.5.0, easyblocks: 3.5.0) on host
sny02.sunya.rajagiritech.edu.in.
== 2019-03-11 00:40:52,830 easyblock.py:270 INFO This is easyblock
EB_binutils from module easybuild.easyblocks.binutils
(/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_easyblocks-3.5.0-py2.7.egg/easybuild/easyblocks/b/binutils.pyo)
== 2019-03-11 00:40:52,831 easyblock.py:815 INFO Build dir set to
/sNow/easybuild/centos/7.3.1611/Broadwell/build/binutils/2.28/dummy-
== 2019-03-11 00:40:52,831 config.py:460 DEBUG software install path as
specified by 'installpath' and 'subdir_software':
/sNow/easybuild/centos/7.3.1611/Broadwell/software
== 2019-03-11 00:40:52,831 easyconfig.py:1688 DEBUG Determining software
installation subdir for
<easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x2932210>
== 2019-03-11 00:40:52,831 easyconfig.py:1694 DEBUG Obtained subdir
binutils/2.28
== 2019-03-11 00:40:52,831 easyblock.py:856 INFO Software install dir set
to /sNow/easybuild/centos/7.3.1611/Broadwell/software/binutils/2.28
== 2019-03-11 00:40:52,831 config.py:460 DEBUG modules install path as
specified by 'installpath' and 'subdir_modules':
/sNow/easybuild/centos/7.3.1611/Broadwell/modules
== 2019-03-11 00:40:52,831 easyblock.py:861 INFO Module install dir set to
/sNow/easybuild/centos/7.3.1611/Broadwell/modules/all
== 2019-03-11 00:40:52,831 easyblock.py:249 INFO Init completed for
application name binutils version 2.28
== 2019-03-11 00:40:52,831 easyblock.py:2659 INFO Obtained application
instance of for binutils (easyblock: None)
== 2019-03-11 00:40:52,831 easyblock.py:2672 DEBUG Skip set to False
== 2019-03-11 00:40:52,832 build_log.py:233 INFO building and installing
binutils/2.28...
== 2019-03-11 00:40:52,832 easyblock.py:2438 DEBUG Not skipping fetch step
(skippable: False, skip: None, skipsteps: [], module_only: False, force:
False
== 2019-03-11 00:40:52,832 build_log.py:233 INFO fetching files...
== 2019-03-11 00:40:52,832 easyblock.py:2446 INFO Starting fetch step
== 2019-03-11 00:40:52,832 templates.py:151 DEBUG config:
<easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x2932210>
== 2019-03-11 00:40:52,832 templates.py:175 DEBUG version found in
easyconfig is 2.28
== 2019-03-11 00:40:52,832 templates.py:219 DEBUG name: github_account,
config: None
== 2019-03-11 00:40:52,832 templates.py:219 DEBUG name: name, config:
binutils
== 2019-03-11 00:40:52,832 templates.py:219 DEBUG name: version, config:
2.28
== 2019-03-11 00:40:52,833 templates.py:219 DEBUG name: versionsuffix,
config:
== 2019-03-11 00:40:52,833 templates.py:219 DEBUG name: versionprefix,
config:
== 2019-03-11 00:40:52,833 templates.py:151 DEBUG config:
<easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x2932210>
== 2019-03-11 00:40:52,833 templates.py:175 DEBUG version found in
easyconfig is 2.28
== 2019-03-11 00:40:52,833 templates.py:219 DEBUG name: github_account,
config: None
== 2019-03-11 00:40:52,833 templates.py:219 DEBUG name: name, config:
binutils
== 2019-03-11 00:40:52,833 templates.py:219 DEBUG name: version, config:
2.28
== 2019-03-11 00:40:52,833 templates.py:219 DEBUG name: versionsuffix,
config:
== 2019-03-11 00:40:52,833 templates.py:219 DEBUG name: versionprefix,
config:
== 2019-03-11 00:40:52,833 easyblock.py:2452 INFO Running method fetch_step
part of step fetch
== 2019-03-11 00:40:52,834 easyblock.py:1557 WARNING Easyconfig does not
specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest
version
== 2019-03-11 00:40:52,834 filetools.py:343 INFO Command eb found at
/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/bin/eb
== 2019-03-11 00:40:52,834 tools.py:263 DEBUG Also considering installation
prefix /sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0...
== 2019-03-11 00:40:52,834 tools.py:268 DEBUG Checking for
easybuild/easyconfigs at
/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_easyconfigs-3.5.0-py2.7.egg/easybuild/easyconfigs/easybuild/easyconfigs
== 2019-03-11 00:40:52,834 tools.py:268 DEBUG Checking for
easybuild/easyconfigs at easybuild/easyconfigs
== 2019-03-11 00:40:52,834 tools.py:268 DEBUG Checking for
easybuild/easyconfigs at
/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/lib/python2.7/site-packages/vsc_install-0.10.26-py2.7.egg/easybuild/easyconfigs
== 2019-03-11 00:40:52,835 tools.py:268 DEBUG Checking for
easybuild/easyconfigs at
/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/lib/python2.7/site-packages/vsc_base-2.5.8-py2.7.egg/easybuild/easyconfigs
== 2019-03-11 00:40:52,835 tools.py:268 DEBUG Checking for
easybuild/easyconfigs at
/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_framework-3.5.0-py2.7.egg/easybuild/easyconfigs
== 2019-03-11 00:40:52,835 tools.py:268 DEBUG Checking for
easybuild/easyconfigs at
/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_easyblocks-3.5.0-py2.7.egg/easybuild/easyconfigs
== 2019-03-11 00:40:52,835 tools.py:268 DEBUG Checking for
easybuild/easyconfigs at
/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_easyconfigs-3.5.0-py2.7.egg/easybuild/easyconfigs
== 2019-03-11 00:40:52,835 tools.py:272 DEBUG Added
/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_easyconfigs-3.5.0-py2.7.egg/easybuild/easyconfigs
to list of paths for easybuild/easyconfigs
== 2019-03-11 00:40:52,835 tools.py:268 DEBUG Checking for
easybuild/easyconfigs at
/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild/easyconfigs
== 2019-03-11 00:40:52,836 tools.py:268 DEBUG Checking for
easybuild/easyconfigs at
/sNow/easybuild/installation/lib/python2.7/site-packages/easybuild/easyconfigs
== 2019-03-11 00:40:52,836 tools.py:268 DEBUG Checking for
easybuild/easyconfigs at
/sNow/easybuild/software/EasyBuild/3.2.1/lib/python2.7/site-packages/easybuild_easyconfigs-3.2.1-py2.7.egg/easybuild/easyconfigs/i/iimpi/easybuild/easyconfigs
== 2019-03-11 00:40:52,836 tools.py:268 DEBUG Checking for
easybuild/easyconfigs at /usr/lib64/python27.zip/easybuild/easyconfigs
== 2019-03-11 00:40:52,836 tools.py:268 DEBUG Checking for
easybuild/easyconfigs at /usr/lib64/python2.7/easybuild/easyconfigs
== 2019-03-11 00:40:52,836 tools.py:268 DEBUG Checking for
easybuild/easyconfigs at
/usr/lib64/python2.7/plat-linux2/easybuild/easyconfigs
== 2019-03-11 00:40:52,836 tools.py:268 DEBUG Checking for
easybuild/easyconfigs at /usr/lib64/python2.7/lib-tk/easybuild/easyconfigs
== 2019-03-11 00:40:52,836 tools.py:268 DEBUG Checking for
easybuild/easyconfigs at /usr/lib64/python2.7/lib-old/easybuild/easyconfigs
== 2019-03-11 00:40:52,837 tools.py:268 DEBUG Checking for
easybuild/easyconfigs at
/usr/lib64/python2.7/lib-dynload/easybuild/easyconfigs
== 2019-03-11 00:40:52,837 tools.py:268 DEBUG Checking for
easybuild/easyconfigs at
/usr/lib64/python2.7/site-packages/easybuild/easyconfigs
== 2019-03-11 00:40:52,837 tools.py:268 DEBUG Checking for
easybuild/easyconfigs at
/usr/lib/python2.7/site-packages/easybuild/easyconfigs
== 2019-03-11 00:40:52,838 tools.py:268 DEBUG Checking for
easybuild/easyconfigs at
/sNow/easybuild/installation/lib/python2.7/site-packages/easybuild/easyconfigs
== 2019-03-11 00:40:52,838 tools.py:268 DEBUG Checking for
easybuild/easyconfigs at
/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/easybuild/easyconfigs
== 2019-03-11 00:40:52,839 easyblock.py:646 INFO Found file
binutils-2.28.tar.gz at
/sNow/easybuild/sources/b/binutils/binutils-2.28.tar.gz
== 2019-03-11 00:40:52,839 easyblock.py:362 DEBUG File
/sNow/easybuild/sources/b/binutils/binutils-2.28.tar.gz found for source
binutils-2.28.tar.gz
== 2019-03-11 00:40:52,839 easyblock.py:374 INFO Added sources: [{'path':
'/sNow/easybuild/sources/b/binutils/binutils-2.28.tar.gz', 'cmd': None,
'finalpath':
'/sNow/easybuild/centos/7.3.1611/Broadwell/build/binutils/2.28/dummy-',
'name': 'binutils-2.28.tar.gz', 'checksum':
'cd717966fc761d840d451dbd58d44e1e5b92949d2073d75b73fccb476d772fcf'}]
== 2019-03-11 00:40:52,839 easyblock.py:1598 INFO no patches provided
== 2019-03-11 00:40:52,839 filetools.py:652 DEBUG Using blocksize 16777216
for calculating the checksum
== 2019-03-11 00:40:52,925 easyblock.py:1608 INFO md5 checksum for
/sNow/easybuild/sources/b/binutils/binutils-2.28.tar.gz:
d5d270fd0b698ed59ca5ade8e1b5059c
== 2019-03-11 00:40:52,925 filetools.py:652 DEBUG Using blocksize 16777216
for calculating the checksum
== 2019-03-11 00:40:53,059 easyblock.py:1608 INFO sha256 checksum for
/sNow/easybuild/sources/b/binutils/binutils-2.28.tar.gz:
cd717966fc761d840d451dbd58d44e1e5b92949d2073d75b73fccb476d772fcf
== 2019-03-11 00:40:53,060 easyconfig.py:1676 DEBUG Determining full module
name for <easybuild.framework.easyconfig.easyconfig.EasyConfig object at
0x2932210> (force_visible: False)
== 2019-03-11 00:40:53,060 easyconfig.py:1656 DEBUG No alternative software
name specified to determine module name with
== 2019-03-11 00:40:53,060 utilities.py:103 DEBUG Module name binutils/2.28
validated
== 2019-03-11 00:40:53,060 easyconfig.py:1683 DEBUG Obtained valid full
module name binutils/2.28
== 2019-03-11 00:40:53,060 config.py:460 DEBUG modules install path as
specified by 'installpath' and 'subdir_modules':
/sNow/easybuild/centos/7.3.1611/Broadwell/modules
== 2019-03-11 00:40:53,060 easyblock.py:1641 INFO Checking dirs that need
to be created:
['/sNow/easybuild/centos/7.3.1611/Broadwell/software/binutils/2.28',
'/sNow/easybuild/centos/7.3.1611/Broadwell/modules/all/binutils',
'/sNow/easybuild/centos/7.3.1611/Broadwell/modules/tools/binutils']
== 2019-03-11 00:40:53,061 filetools.py:1135 DEBUG Not creating existing
path /sNow/easybuild/centos/7.3.1611/Broadwell/software/binutils/2.28
== 2019-03-11 00:40:53,061 filetools.py:1135 DEBUG Not creating existing
path /sNow/easybuild/centos/7.3.1611/Broadwell/modules/all/binutils
== 2019-03-11 00:40:53,061 filetools.py:1135 DEBUG Not creating existing
path /sNow/easybuild/centos/7.3.1611/Broadwell/modules/tools/binutils
== 2019-03-11 00:40:53,061 easyblock.py:2438 DEBUG Not skipping ready step
(skippable: False, skip: None, skipsteps: [], module_only: False, force:
False
== 2019-03-11 00:40:53,062 build_log.py:233 INFO creating build dir,
resetting environment...
== 2019-03-11 00:40:53,062 easyblock.py:2446 INFO Starting ready step
== 2019-03-11 00:40:53,062 templates.py:151 DEBUG config:
<easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x2932210>
== 2019-03-11 00:40:53,062 templates.py:175 DEBUG version found in
easyconfig is 2.28
== 2019-03-11 00:40:53,062 templates.py:219 DEBUG name: github_account,
config: None
== 2019-03-11 00:40:53,062 templates.py:219 DEBUG name: name, config:
binutils
== 2019-03-11 00:40:53,062 templates.py:219 DEBUG name: version, config:
2.28
== 2019-03-11 00:40:53,062 templates.py:219 DEBUG name: versionsuffix,
config:
== 2019-03-11 00:40:53,062 templates.py:219 DEBUG name: versionprefix,
config:
== 2019-03-11 00:40:53,062 templates.py:151 DEBUG config:
<easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x2932210>
== 2019-03-11 00:40:53,063 templates.py:175 DEBUG version found in
easyconfig is 2.28
== 2019-03-11 00:40:53,063 templates.py:219 DEBUG name: github_account,
config: None
== 2019-03-11 00:40:53,063 templates.py:219 DEBUG name: name, config:
binutils
== 2019-03-11 00:40:53,063 templates.py:219 DEBUG name: version, config:
2.28
== 2019-03-11 00:40:53,063 templates.py:219 DEBUG name: versionsuffix,
config:
== 2019-03-11 00:40:53,063 templates.py:219 DEBUG name: versionprefix,
config:
== 2019-03-11 00:40:53,063 easyblock.py:2452 INFO Running method
check_readiness_step part of step ready
== 2019-03-11 00:40:53,063 easyblock.py:1502 DEBUG Desired parallelism
specified via 'parallel' build option: None
== 2019-03-11 00:40:53,064 affinity.py:211 DEBUG sched_getaffinity for pid
10580 returned cpuset 0
== 2019-03-11 00:40:53,064 run.py:163 DEBUG run_cmd: running cmd ulimit -u
(in
/sNow/easybuild/software/EasyBuild/3.2.1/lib/python2.7/site-packages/easybuild_easyconfigs-3.2.1-py2.7.egg/easybuild/easyconfigs/i/iimpi)
== 2019-03-11 00:40:53,064 run.py:183 INFO running cmd: ulimit -u
== 2019-03-11 00:40:53,092 run.py:488 DEBUG cmd "ulimit -u" exited with
exit code 0 and output:
515142
== 2019-03-11 00:40:53,092 run.py:522 DEBUG Using default regular
expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2019-03-11 00:40:53,092 easyblock.py:1505 INFO Setting parallelism: 1
== 2019-03-11 00:40:53,092 modules.py:641 DEBUG Current MODULEPATH:
/sNow/easybuild/centos/7.3.1611/Broadwell/modules/all:/sNow/easybuild/modules/all:/sNow/easybuild/modulefiles/Linux:/sNow/easybuild/modulefiles/Core:/sNow/easybuild/lmod/lmod/modulefiles/Core
== 2019-03-11 00:40:53,093 modules.py:648 DEBUG Changing LD_LIBRARY_PATH
from
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/zlib/1.2.11-foss-2016b/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/ScaLAPACK/2.0.2-gompi-2016b-OpenBLAS-0.2.18-LAPACK-3.6.1/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/FFTW/3.3.4-gompi-2016b/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/OpenBLAS/0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.1/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/OpenMPI/1.10.3-GCC-5.4.0-2.26/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/hwloc/1.11.3-GCC-5.4.0-2.26/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/numactl/2.0.11-GCC-5.4.0-2.26/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/binutils/2.26-GCCcore-5.4.0/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib/gcc/x86_64-unknown-linux-gnu/5.4.0:/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib64:/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib'
to
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/zlib/1.2.11-foss-2016b/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/ScaLAPACK/2.0.2-gompi-2016b-OpenBLAS-0.2.18-LAPACK-3.6.1/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/FFTW/3.3.4-gompi-2016b/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/OpenBLAS/0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.1/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/OpenMPI/1.10.3-GCC-5.4.0-2.26/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/hwloc/1.11.3-GCC-5.4.0-2.26/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/numactl/2.0.11-GCC-5.4.0-2.26/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/binutils/2.26-GCCcore-5.4.0/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib/gcc/x86_64-unknown-linux-gnu/5.4.0:/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib64:/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib'
in environment for module command
== 2019-03-11 00:40:53,093 modules.py:648 DEBUG Changing LD_PRELOAD from ''
to '' in environment for module command
== 2019-03-11 00:40:53,093 modules.py:652 DEBUG Running module command
'/sNow/easybuild/lmod/lmod/libexec/lmod python --terse list' from
/sNow/easybuild/software/EasyBuild/3.2.1/lib/python2.7/site-packages/easybuild_easyconfigs-3.2.1-py2.7.egg/easybuild/easyconfigs/i/iimpi
== 2019-03-11 00:40:53,144 modules.py:658 DEBUG Output of module command
'/sNow/easybuild/lmod/lmod/libexec/lmod python --terse list': stdout:
os.environ["MODULEPATH"] =
"/sNow/easybuild/centos/7.3.1611/Broadwell/modules/all:/sNow/easybuild/modules/all:/sNow/easybuild/modulefiles/Linux:/sNow/easybuild/modulefiles/Core:/sNow/easybuild/lmod/lmod/modulefiles/Core";
os.environ["_ModuleTable001_"] =
"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";
os.environ["_ModuleTable002_"] =
"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";
os.environ["_ModuleTable003_"] =
"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";
os.environ["_ModuleTable004_"] =
"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";
os.environ["_ModuleTable005_"] =
"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";
os.environ["_ModuleTable006_"] =
"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";
os.environ["_ModuleTable007_"] =
"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";
os.environ["_ModuleTable008_"] =
"MC4xMS1HQ0MtNS40LjAtMi4yNi5sdWEiLFsiZnVsbE5hbWUiXT0ibnVtYWN0bC8yLjAuMTEtR0NDLTUuNC4wLTIuMjYiLFsibG9hZE9yZGVyIl09NSxwcm9wVD17fSxbInN0YXR1cyJdPSJhY3RpdmUiLFsidXNlck5hbWUiXT0ibnVtYWN0bC8yLjAuMTEtR0NDLTUuNC4wLTIuMjYiLH0semxpYj17WyJmbiJdPSIvc05vdy9lYXN5YnVpbGQvY2VudG9zLzcuMy4xNjExL0Jyb2Fkd2VsbC9tb2R1bGVzL2FsbC96bGliLzEuMi4xMS1mb3NzLTIwMTZiLmx1YSIsWyJmdWxsTmFtZSJdPSJ6bGliLzEuMi4xMS1mb3NzLTIwMTZiIixbImxvYWRPcmRlciJdPTEzLHByb3BUPXt9LFsic3RhdHVzIl09ImFjdGl2ZSIsWyJ1c2VyTmFtZSJdPSJ6bGliLzEuMi4xMS1mb3NzLTIwMTZiIix9LH0s";
os.environ["_ModuleTable009_"] =
"bXBhdGhBPXsiL3NOb3cvZWFzeWJ1aWxkL2NlbnRvcy83LjMuMTYxMS9Ccm9hZHdlbGwvbW9kdWxlcy9hbGwiLCIvc05vdy9lYXN5YnVpbGQvbW9kdWxlcy9hbGwiLCIvc05vdy9lYXN5YnVpbGQvbW9kdWxlZmlsZXMvTGludXgiLCIvc05vdy9lYXN5YnVpbGQvbW9kdWxlZmlsZXMvQ29yZSIsIi9zTm93L2Vhc3lidWlsZC9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvc05vdy9lYXN5YnVpbGQvbW9kdWxlcy9hbGw6L3NOb3cvZWFzeWJ1aWxkL2NlbnRvcy83LjMuMTYxMS9Ccm9hZHdlbGwvbW9kdWxlcy9hbGw6L3NOb3cvZWFzeWJ1aWxkL21vZHVsZWZpbGVzL0xpbnV4Oi9zTm93L2Vhc3lidWlsZC9tb2R1bGVmaWxlcy9Db3JlOi9z";
os.environ["_ModuleTable010_"] =
"Tm93L2Vhc3lidWlsZC9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==";
os.environ["_ModuleTable_Sz_"] = "10";
; stderr: EasyBuild/3.5.0
GCCcore/5.4.0
binutils/2.26-GCCcore-5.4.0
GCC/5.4.0-2.26
numactl/2.0.11-GCC-5.4.0-2.26
hwloc/1.11.3-GCC-5.4.0-2.26
OpenMPI/1.10.3-GCC-5.4.0-2.26
OpenBLAS/0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.1
gompi/2016b
FFTW/3.3.4-gompi-2016b
ScaLAPACK/2.0.2-gompi-2016b-OpenBLAS-0.2.18-LAPACK-3.6.1
foss/2016b
zlib/1.2.11-foss-2016b
== 2019-03-11 00:40:53,144 modules.py:1109 DEBUG Output found in stdout,
seems like '/sNow/easybuild/lmod/lmod/libexec/lmod python --terse list' ran
fine
== 2019-03-11 00:40:53,144 modules.py:695 DEBUG Correcting paths in
$LD_LIBRARY_PATH from
['/sNow/easybuild/centos/7.3.1611/Broadwell/software/zlib/1.2.11-foss-2016b/lib',
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/ScaLAPACK/2.0.2-gompi-2016b-OpenBLAS-0.2.18-LAPACK-3.6.1/lib',
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/FFTW/3.3.4-gompi-2016b/lib',
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/OpenBLAS/0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.1/lib',
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/OpenMPI/1.10.3-GCC-5.4.0-2.26/lib',
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/hwloc/1.11.3-GCC-5.4.0-2.26/lib',
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/numactl/2.0.11-GCC-5.4.0-2.26/lib',
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/binutils/2.26-GCCcore-5.4.0/lib',
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib/gcc/x86_64-unknown-linux-gnu/5.4.0',
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib64',
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib'] to
['/sNow/easybuild/centos/7.3.1611/Broadwell/software/zlib/1.2.11-foss-2016b/lib',
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/ScaLAPACK/2.0.2-gompi-2016b-OpenBLAS-0.2.18-LAPACK-3.6.1/lib',
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/FFTW/3.3.4-gompi-2016b/lib',
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/OpenBLAS/0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.1/lib',
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/OpenMPI/1.10.3-GCC-5.4.0-2.26/lib',
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/hwloc/1.11.3-GCC-5.4.0-2.26/lib',
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/numactl/2.0.11-GCC-5.4.0-2.26/lib',
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/binutils/2.26-GCCcore-5.4.0/lib',
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib/gcc/x86_64-unknown-linux-gnu/5.4.0',
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib64',
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib']
== 2019-03-11 00:40:53,145 environment.py:97 INFO Environment variable
LD_LIBRARY_PATH set to
/sNow/easybuild/centos/7.3.1611/Broadwell/software/zlib/1.2.11-foss-2016b/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/ScaLAPACK/2.0.2-gompi-2016b-OpenBLAS-0.2.18-LAPACK-3.6.1/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/FFTW/3.3.4-gompi-2016b/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/OpenBLAS/0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.1/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/OpenMPI/1.10.3-GCC-5.4.0-2.26/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/hwloc/1.11.3-GCC-5.4.0-2.26/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/numactl/2.0.11-GCC-5.4.0-2.26/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/binutils/2.26-GCCcore-5.4.0/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib/gcc/x86_64-unknown-linux-gnu/5.4.0:/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib64:/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib
(previous value:
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/zlib/1.2.11-foss-2016b/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/ScaLAPACK/2.0.2-gompi-2016b-OpenBLAS-0.2.18-LAPACK-3.6.1/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/FFTW/3.3.4-gompi-2016b/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/OpenBLAS/0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.1/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/OpenMPI/1.10.3-GCC-5.4.0-2.26/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/hwloc/1.11.3-GCC-5.4.0-2.26/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/numactl/2.0.11-GCC-5.4.0-2.26/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/binutils/2.26-GCCcore-5.4.0/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib/gcc/x86_64-unknown-linux-gnu/5.4.0:/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib64:/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib')
== 2019-03-11 00:40:53,145 modules.py:695 DEBUG Correcting paths in
$LD_PRELOAD from [''] to []
== 2019-03-11 00:40:53,145 environment.py:97 INFO Environment variable
LD_PRELOAD set to (previous value: '')
== 2019-03-11 00:40:53,145 easyblock.py:1510 WARNING Loaded modules
detected: ['EasyBuild/3.5.0', 'GCCcore/5.4.0',
'binutils/2.26-GCCcore-5.4.0', 'GCC/5.4.0-2.26',
'numactl/2.0.11-GCC-5.4.0-2.26', 'hwloc/1.11.3-GCC-5.4.0-2.26',
'OpenMPI/1.10.3-GCC-5.4.0-2.26',
'OpenBLAS/0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.1', 'gompi/2016b',
'FFTW/3.3.4-gompi-2016b',
'ScaLAPACK/2.0.2-gompi-2016b-OpenBLAS-0.2.18-LAPACK-3.6.1', 'foss/2016b',
'zlib/1.2.11-foss-2016b']
== 2019-03-11 00:40:53,145 utilities.py:101 DEBUG Skipping importing of
toolchain modules, processing of toolchain constants is already done.
== 2019-03-11 00:40:53,146 systemtools.py:211 DEBUG Determined CPU
architecture: x86_64
== 2019-03-11 00:40:53,146 systemtools.py:211 DEBUG Determined CPU
architecture: x86_64
== 2019-03-11 00:40:53,146 systemtools.py:247 DEBUG Determined CPU vendor
on Linux as being 'Intel' via regex 'vendor_id\s+:\s*(\S+)' in /proc/cpuinfo
== 2019-03-11 00:40:53,146 systemtools.py:273 DEBUG Using vendor as CPU
family: Intel
== 2019-03-11 00:40:53,147 utilities.py:140 DEBUG Obtained new toolchain
instance for ('dummy', ''): {'dummy': True, 'versionsuffix': '', 'version':
'', 'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'dummy',
'full_mod_name': None, 'hidden': False, 'parsed': True, 'short_mod_name':
None}
== 2019-03-11 00:40:53,147 options.py:64 DEBUG Using toolchain options
{'precise': (False, 'High precision'), 'verbose': (False, 'Verbose
output'), 'rpath': (True, 'Use RPATH wrappers when --rpath is enabled in
EasyBuild configuration'), 'pic': (False, 'Use PIC'), 'static': (False,
'Build static library'), 'optarch': (True, 'Enable architecture
optimizations'), 'ieee': (False, 'Adhere to IEEE-754 rules'), 'veryloose':
(False, 'Very loose precision'), 'strict': (False, 'Strict (highest)
precision'), 'unroll': (False, 'Unroll loops'), 'lowopt': (False, 'Low
compiler optimizations'), 'shared': (False, 'Build shared library'), 'opt':
(False, 'High compiler optimizations'), 'i8': (False, 'Integers are 8 byte
integers'), 'loose': (False, 'Loose precision'), 'cstd': (None, 'Specify C
standard'), 'defaultprec': (False, 'Default precision'), 'openmp': (False,
'Enable OpenMP'), 'noopt': (False, 'Disable compiler optimizations'),
'packed-linker-options': (False, 'Pack the linker options as comma
separated list'), 'r8': (False, 'Real is 8 byte real'), 'cciscxx': (False,
'Use CC as CXX'), '32bit': (False, 'Compile 32bit target'), 'debug':
(False, 'Enable debug'), 'defaultopt': (False, 'Default compiler
optimizations')}
== 2019-03-11 00:40:53,147 easyconfig.py:666 DEBUG Initialized toolchain:
{'dummy': True, 'versionsuffix': '', 'version': '', 'toolchain':
{'version': 'dummy', 'name': 'dummy'}, 'name': 'dummy', 'full_mod_name':
None, 'hidden': False, 'parsed': True, 'short_mod_name': None} (opts: None)
== 2019-03-11 00:40:53,147 easyconfig.py:608 DEBUG Dependencies BEFORE
filtering: [{'external_module_metadata': {}, 'full_mod_name': 'flex/2.6.3',
'toolchain': {'version': '', 'name': 'dummy'}, 'name': 'flex', 'dummy':
True, 'short_mod_name': 'flex/2.6.3', 'external_module': False,
'versionsuffix': '', 'version': '2.6.3', 'toolchain_inherited': True,
'hidden': False, 'build_only': True}, {'external_module_metadata': {},
'full_mod_name': 'Bison/3.0.4', 'toolchain': {'version': '', 'name':
'dummy'}, 'name': 'Bison', 'dummy': True, 'short_mod_name': 'Bison/3.0.4',
'external_module': False, 'versionsuffix': '', 'version': '3.0.4',
'toolchain_inherited': True, 'hidden': False, 'build_only': True},
{'external_module_metadata': {}, 'full_mod_name': 'zlib/1.2.11',
'toolchain': {'version': '', 'name': 'dummy'}, 'name': 'zlib', 'dummy':
True, 'short_mod_name': 'zlib/1.2.11', 'external_module': False,
'versionsuffix': '', 'version': '1.2.11', 'toolchain_inherited': True,
'hidden': False, 'build_only': True}]
== 2019-03-11 00:40:53,147 toolchain.py:376 DEBUG add_dependencies: adding
toolchain dependencies [{'external_module_metadata': {}, 'full_mod_name':
'flex/2.6.3', 'toolchain': {'version': '', 'name': 'dummy'}, 'name':
'flex', 'dummy': True, 'short_mod_name': 'flex/2.6.3', 'external_module':
False, 'versionsuffix': '', 'version': '2.6.3', 'toolchain_inherited':
True, 'hidden': False, 'build_only': True}, {'external_module_metadata':
{}, 'full_mod_name': 'Bison/3.0.4', 'toolchain': {'version': '', 'name':
'dummy'}, 'name': 'Bison', 'dummy': True, 'short_mod_name': 'Bison/3.0.4',
'external_module': False, 'versionsuffix': '', 'version': '3.0.4',
'toolchain_inherited': True, 'hidden': False, 'build_only': True},
{'external_module_metadata': {}, 'full_mod_name': 'zlib/1.2.11',
'toolchain': {'version': '', 'name': 'dummy'}, 'name': 'zlib', 'dummy':
True, 'short_mod_name': 'zlib/1.2.11', 'external_module': False,
'versionsuffix': '', 'version': '1.2.11', 'toolchain_inherited': True,
'hidden': False, 'build_only': True}]
== 2019-03-11 00:40:53,148 toolchain.py:386 DEBUG add_dependencies:
MODULEPATH:
/sNow/easybuild/centos/7.3.1611/Broadwell/modules/all:/sNow/easybuild/modules/all:/sNow/easybuild/modulefiles/Linux:/sNow/easybuild/modulefiles/Core:/sNow/easybuild/lmod/lmod/modulefiles/Core
== 2019-03-11 00:40:53,148 modules.py:422 DEBUG Found cached result for
'module avail' with key
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'libreadline/6.3', 'libreadline/6.3-GCCcore-6.3.0',
'libreadline/6.3-foss-2016a', 'libreadline/6.3-foss-2016b',
'libreadline/6.3-foss-2017a', 'libreadline/6.3-intel-2017a',
'libreadline/7.0-GCCcore-6.3.0', 'libtool/2.4.6',
'libtool/2.4.6-GCCcore-6.3.0', 'libtool/2.4.6-GNU-4.9.3-2.25',
'libtool/2.4.6-foss-2016a', 'libtool/2.4.6-foss-2016b',
'libtool/2.4.6-foss-2017a', 'libtool/2.4.6-intel-2017a',
'libunwind/1.1-foss-2016a', 'libunwind/1.1-foss-2016b',
'libxcb/1.11.1-foss-2016a', 'libxcb/1.11.1-foss-2016b',
'libxml2/2.9.3-foss-2016a', 'libxml2/2.9.3-foss-2016b',
'libxml2/2.9.3-foss-2017a', 'libxml2/2.9.4-GCCcore-6.3.0',
'libxml2/2.9.4-foss-2016b', 'libxml2/2.9.4-foss-2016b-Python-2.7.12',
'libxml2/2.9.4-foss-2017a', 'libxml2/2.9.4-foss-2017a-Python-2.7.13',
'libxml2/2.9.4-intel-2017a', 'libxml2/2.9.4-intel-2017a-Python-2.7.13',
'likwid/4.0.1-GNU-4.9.3-2.25', 'lm-sensors/3.4.0', 'lmod/7.4.17',
'makedepend/1.0.5-foss-2016a', 'matplotlib/1.5.1-foss-2016a-Python-2.7.11',
'matplotlib/1.5.1-foss-2016a-Python-2.7.11-freetype-2.6.3',
'matplotlib/1.5.1-foss-2016a-Python-3.5.1',
'matplotlib/1.5.3-foss-2016b-Python-2.7.12', 'nano/2.2.6-foss-2016b',
'ncurses/5.9-GCC-4.9.2', 'ncurses/5.9-foss-2016b', 'ncurses/6.0',
'ncurses/6.0-GCCcore-6.3.0', 'ncurses/6.0-foss-2016a',
'ncurses/6.0-foss-2016b', 'ncurses/6.0-foss-2017a',
'ncurses/6.0-intel-2017a', 'netCDF/4.4.1-foss-2016b',
'nettle/3.2-foss-2016b', 'nettle/3.2-foss-2017a', 'nettle/3.2-intel-2017a',
'nettle/3.3-intel-2017a', 'networkx/1.11-foss-2016a-Python-2.7.11',
'networkx/2.2-foss-2016b-Python-2.7.11', 'nodejs/4.4.7-foss-2016a',
'nodejs/6.10.3-foss-2017a', 'ns/2.35-foss-2016b',
'numactl/2.0.11-GCC-4.9.3-2.25', 'numactl/2.0.11-GCC-5.4.0-2.26',
'numactl/2.0.11-GCC-6.3.0-2.27', 'numactl/2.0.11-foss-2016a',
'numpy/1.11.0-foss-2016b-Python-2.7.11', 'otcl/1.14-foss-2016b',
'pandas/0.18.0-foss-2016a-Python-3.5.1',
'pip/8.1.2-foss-2016b-Python-2.7.12', 'pixman/0.34.0-GCCcore-6.3.0',
'pixman/0.34.0-foss-2016a', 'pixman/0.34.0-foss-2016b',
'pixman/0.34.0-foss-2017a', 'pkg-config/0.29-foss-2016a',
'pkg-config/0.29-foss-2016b', 'pkg-config/0.29.1-GCCcore-6.3.0',
'pkg-config/0.29.1-foss-2016b', 'pkg-config/0.29.1-foss-2017a',
'pkg-config/0.29.1-intel-2017a', 'pkg-config/0.29.2-intel-2017a',
'protobuf-python/3.2.0-foss-2016b-Python-2.7.12',
'protobuf/3.2.0-foss-2016b', 'protobuf/3.3.0-foss-2017a',
'qrupdate/1.1.2-foss-2016a', 'qrupdate/1.1.2-foss-2016b',
'qrupdate/1.1.2-intel-2017a', 'randrproto/1.5.0-foss-2016a',
'renderproto/0.11-foss-2016a', 'renderproto/0.11-foss-2016b',
'requests/2.10.0-foss-2016a-Python-2.7.11',
'scikit-learn/0.17.1-foss-2016a-Python-2.7.11',
'scikit-learn/0.17.1-foss-2016a-Python-3.5.1',
'scikit-learn/0.18.1-foss-2016b-Python-2.7.12', 'settarg/7.4.17',
'stress/1.0.4-foss-2016b', 'supermagic/20170824-foss-2016a',
'supermagic/20170824-foss-2017a', 'tclcl/1.20-foss-2016b',
'testpath/0.3-foss-2016a-Python-3.5.1', 'util-linux/2.29.2-intel-2017a',
'util-linux/2.30.1-GCCcore-6.3.0', 'x264/20160614-foss-2016b',
'xcb-proto/1.11', 'xextproto/7.3.0-foss-2016a',
'xextproto/7.3.0-foss-2016b', 'xextproto/7.3.0-foss-2017a',
'xineramaproto/1.2.1-foss-2016a', 'xorg-macros/1.19.0-foss-2016a',
'xorg-macros/1.19.0-foss-2016b', 'xorg-macros/1.19.0-foss-2017a',
'xprop/1.2.2-foss-2016a', 'xprop/1.2.2-foss-2016b',
'xprop/1.2.2-foss-2017a', 'xprop/1.2.2-intel-2017a',
'xproto/7.0.28-foss-2016a', 'xproto/7.0.28-foss-2016b',
'xproto/7.0.28-foss-2017a', 'xtrans/1.3.5-foss-2016a',
'xtrans/1.3.5-foss-2016b', 'xtrans/1.3.5-foss-2017a', 'zlib/1.2.11',
'zlib/1.2.11-GCCcore-6.3.0', 'zlib/1.2.11-foss-2016a',
'zlib/1.2.11-foss-2016b', 'zlib/1.2.7-foss-2016b', 'zlib/1.2.8',
'zlib/1.2.8-GCC-4.9.3-binutils-2.25', 'zlib/1.2.8-GCC-5.4.0-2.26',
'zlib/1.2.8-GCCcore-4.9.3', 'zlib/1.2.8-GCCcore-5.4.0',
'zlib/1.2.8-GCCcore-6.3.0', 'zlib/1.2.8-foss-2016a',
'zlib/1.2.8-foss-2016b', 'zlib/1.2.8-foss-2017a', 'zlib/1.2.8-intel-2017a']
== 2019-03-11 00:40:53,148 easyconfig.py:608 DEBUG Dependencies BEFORE
filtering: [{'external_module_metadata': {}, 'full_mod_name': 'flex/2.6.3',
'toolchain': {'version': '', 'name': 'dummy'}, 'name': 'flex', 'dummy':
True, 'short_mod_name': 'flex/2.6.3', 'external_module': False,
'versionsuffix': '', 'version': '2.6.3', 'toolchain_inherited': True,
'hidden': False, 'build_only': True}, {'external_module_metadata': {},
'full_mod_name': 'Bison/3.0.4', 'toolchain': {'version': '', 'name':
'dummy'}, 'name': 'Bison', 'dummy': True, 'short_mod_name': 'Bison/3.0.4',
'external_module': False, 'versionsuffix': '', 'version': '3.0.4',
'toolchain_inherited': True, 'hidden': False, 'build_only': True},
{'external_module_metadata': {}, 'full_mod_name': 'zlib/1.2.11',
'toolchain': {'version': '', 'name': 'dummy'}, 'name': 'zlib', 'dummy':
True, 'short_mod_name': 'zlib/1.2.11', 'external_module': False,
'versionsuffix': '', 'version': '1.2.11', 'toolchain_inherited': True,
'hidden': False, 'build_only': True}]
== 2019-03-11 00:40:53,175 build_log.py:158 ERROR EasyBuild crashed with an
error (at
easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/lib/python2.7/site-packages/vsc_base-2.5.8-py2.7.egg/vsc/utils/exceptions.py:124
in __init__): Module is already loaded (EBROOTBINUTILS is set),
installation cannot continue. (at
easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_framework-3.5.0-py2.7.egg/easybuild/framework/easyblock.py:1522
in check_readiness_step)
== 2019-03-11 00:40:53,175 easyblock.py:2685 WARNING build failed (first
300 chars): Module is already loaded (EBROOTBINUTILS is set), installation
cannot continue.
== 2019-03-11 00:40:53,175 easyblock.py:279 INFO Closing log for
application name binutils version 2.28
Please do help us.
With Regards
Sona
