Hi Kenneth,
I have tried using module purge and got the same error.
I have attached the log file along with this email
With regards
Sona
On Mon, Mar 11, 2019 at 3:20 PM Kenneth Hoste <[email protected]
<mailto:[email protected]>> wrote:
Dear Sona,
Please try using "module purge" yourself, since the 'purge' that
EasyBuild does is a bit fragile.
If that doesn't help, please send back the EasyBuild log file
(ideally
collected using "eb --debug").
regards,
Kenneth
On 11/03/2019 07:45, Ms. Sona CP wrote:
> Thank you for your response.
>
> I have done the same as you suggested but I got same error.
>
> eb binutils-2.31.1.eb --detect-loaded-modules=purge
> == temporary log file in case of crash
> /tmp/jobs/snow/6238/eb-XukcYq/easybuild-5us1c8.log
> == processing EasyBuild easyconfig
>
/sNow/easybuild/software/EasyBuild/3.2.1/lib/python2.7/site-packages/easybuild_easyconfigs-3.2.1-py2.7.egg/easybuild/easyconfigs/b/binutils/binutils-2.31.1.eb
> == building and installing binutils/2.31.1. <http://2.31.1.>
<http://2.31.1.>..
> == fetching files...
> == creating build dir, resetting environment...
> == unpacking...
> == patching...
> == preparing...
> == configuring...
> == building...
> == FAILED: Installation ended unsuccessfully (build directory:
>
/sNow/easybuild/centos/7.3.1611/Broadwell/build/binutils/2.31.1/dummy-):
> build failed (first 300 chars): cmd " env
LIBS='-Wl,-rpath=/usr/lib
> -Wl,-rpath=/usr/lib64' make -j 1 CFLAGS="-g -O2 -fPIC" " exited
with
> exit code 2 and output:
> make[1]: Entering directory
>
`/sNow/easybuild/centos/7.3.1611/Broadwell/build/binutils/2.31.1/dummy-/binutils-2.31.1'
> Configuring in ./libiberty
> configure: creating cache
> == Results of the build can be found in the log file(s)
>
/sNow/easybuild/tmp/easybuild-binutils-2.31.1-20190311.024240.SUBdY.log
> ERROR: Build of
>
/sNow/easybuild/software/EasyBuild/3.2.1/lib/python2.7/site-packages/easybuild_easyconfigs-3.2.1-py2.7.egg/easybuild/easyconfigs/b/binutils/binutils-2.31.1.eb
> failed (err: 'build failed (first 300 chars): cmd " env
> LIBS=\'-Wl,-rpath=/usr/lib -Wl,-rpath=/usr/lib64\' make -j 1
> CFLAGS="-g -O2 -fPIC" " exited with exit code 2 and
output:\nmake[1]:
> Entering directory
>
`/sNow/easybuild/centos/7.3.1611/Broadwell/build/binutils/2.31.1/dummy-/binutils-2.31.1\'\nConfiguring
> in ./libiberty\nconfigure: creating cache')
>
>
> On Mon, Mar 11, 2019 at 12:04 PM Kenneth Hoste
<[email protected] <mailto:[email protected]>
> <mailto:[email protected] <mailto:[email protected]>>>
wrote:
>
> Dear Sona,
>
> As the warning describes, you shouldn't have any software
modules
> loaded
> when building software with EasyBuild.
> It may explain the problem you are seeing.
>
> Please try running 'eb' again after unloaded the modules,
using 'module
> purge'.
>
>
> regards,
>
> Kenneth
>
>
> On 11/03/2019 06:02, Ms. Sona CP wrote:
> > Hi,
> > While installing iimpi file, we are getting an error with
binutils
> > showing module already loaded. Many more software
installation like
> > intel/2018a , Python 3.6.4 etc showed same error. It is
showing a
> > linking error with zlib file. How to resolve this error.
> > Following are the log file contents got from iimpi
installation
> >
> > temporary log file in case of crash
> > /tmp/jobs/snow/6234/eb-SX6mFh/easybuild-vCIfI1.log
> >
> > WARNING: Found one or more non-allowed loaded
(EasyBuild-generated)
> > modules in current environment:
> > * GCCcore/5.4.0
> > * GCCcore/5.4.0
> > * binutils/2.26-GCCcore-5.4.0
> > * numactl/2.0.11-GCC-5.4.0-2.26
> > * hwloc/1.11.3-GCC-5.4.0-2.26
> > * OpenMPI/1.10.3-GCC-5.4.0-2.26
> > * OpenBLAS/0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.1
> > * gompi/2016b
> > * FFTW/3.3.4-gompi-2016b
> > * ScaLAPACK/2.0.2-gompi-2016b-OpenBLAS-0.2.18-LAPACK-3.6.1
> > * foss/2016b
> > * zlib/1.2.11-foss-2016b
> >
> > This is not recommended since it may affect the
installation
> > procedure(s) performed by EasyBuild.
> >
> > To make EasyBuild allow particular loaded modules, use the
> > --allow-loaded-modules configuration option.
> > To specify action to take when loaded modules are
detected, use
> > --detect-loaded-modules={error,ignore,purge,unload,warn}.
> >
> > See
> >
>
http://easybuild.readthedocs.io/en/latest/Detecting_loaded_modules.html
> > for more information.
> >
> > == resolving dependencies ...
> > == processing EasyBuild easyconfig
> >
>
/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_easyconfigs-3.5.0-py2.7.egg/easybuild/easyconfigs/b/binutils/binutils-2.28.eb
> > == building and installing binutils/2.28...
> > == fetching files...
> > == creating build dir, resetting environment...
> > == FAILED: Installation ended unsuccessfully (build
directory:
> >
>
/sNow/easybuild/centos/7.3.1611/Broadwell/build/binutils/2.28/dummy-):
> > build failed (first 300 chars): Module is already loaded
> (EBROOTBINUTILS
> > is set), installation cannot continue.
> > == Results of the build can be found in the log file(s)
> >
/sNow/easybuild/tmp/easybuild-binutils-2.28-20190311.004052.fAtBQ.log
> > ERROR: Build of
> >
>
/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_easyconfigs-3.5.0-py2.7.egg/easybuild/easyconfigs/b/binutils/binutils-2.28.eb
>
> > failed (err: 'build failed (first 300 chars): Module is
already
> loaded
> > (EBROOTBINUTILS is set), installation cannot continue.')
> >
>
snow@sny02:/sNow/easybuild/software/EasyBuild/3.2.1/lib/python2.7/site-packages/easybuild_easyconfigs-3.2.1-py2.7.egg/easybuild/easyconfigs/i/
> > iimpi$ cat
> >
/sNow/easybuild/tmp/easybuild-binutils-2.28-20190311.004052.fAtBQ.log
> > == 2019-03-11 00:40:52,830 easyblock.py:264 INFO This is
> EasyBuild 3.5.0
> > (framework: 3.5.0, easyblocks: 3.5.0) on host
> > sny02.sunya.rajagiritech.edu.in
<http://sny02.sunya.rajagiritech.edu.in>
> <http://sny02.sunya.rajagiritech.edu.in>
> <http://sny02.sunya.rajagiritech.edu.in>.
> > == 2019-03-11 00:40:52,830 easyblock.py:270 INFO This is
easyblock
> > EB_binutils from module easybuild.easyblocks.binutils
> >
>
(/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_easyblocks-3.5.0-py2.7.egg/easybuild/easyblocks/b/binutils.pyo)
> > == 2019-03-11 00:40:52,831 easyblock.py:815 INFO Build dir
set to
> >
/sNow/easybuild/centos/7.3.1611/Broadwell/build/binutils/2.28/dummy-
> > == 2019-03-11 00:40:52,831 config.py:460 DEBUG software
install
> path as
> > specified by 'installpath' and 'subdir_software':
> > /sNow/easybuild/centos/7.3.1611/Broadwell/software
> > == 2019-03-11 00:40:52,831 easyconfig.py:1688 DEBUG
Determining
> software
> > installation subdir for
> > <easybuild.framework.easyconfig.easyconfig.EasyConfig
object at
> 0x2932210>
> > == 2019-03-11 00:40:52,831 easyconfig.py:1694 DEBUG
Obtained subdir
> > binutils/2.28
> > == 2019-03-11 00:40:52,831 easyblock.py:856 INFO Software
install
> dir
> > set to
>
/sNow/easybuild/centos/7.3.1611/Broadwell/software/binutils/2.28
> > == 2019-03-11 00:40:52,831 config.py:460 DEBUG modules
install
> path as
> > specified by 'installpath' and 'subdir_modules':
> > /sNow/easybuild/centos/7.3.1611/Broadwell/modules
> > == 2019-03-11 00:40:52,831 easyblock.py:861 INFO Module
install
> dir set
> > to /sNow/easybuild/centos/7.3.1611/Broadwell/modules/all
> > == 2019-03-11 00:40:52,831 easyblock.py:249 INFO Init
completed for
> > application name binutils version 2.28
> > == 2019-03-11 00:40:52,831 easyblock.py:2659 INFO Obtained
> application
> > instance of for binutils (easyblock: None)
> > == 2019-03-11 00:40:52,831 easyblock.py:2672 DEBUG Skip
set to False
> > == 2019-03-11 00:40:52,832 build_log.py:233 INFO
building and
> installing
> > binutils/2.28...
> > == 2019-03-11 00:40:52,832 easyblock.py:2438 DEBUG Not
skipping
> fetch
> > step (skippable: False, skip: None, skipsteps: [],
module_only:
> False,
> > force: False
> > == 2019-03-11 00:40:52,832 build_log.py:233 INFO fetching
files...
> > == 2019-03-11 00:40:52,832 easyblock.py:2446 INFO Starting
fetch step
> > == 2019-03-11 00:40:52,832 templates.py:151 DEBUG config:
> > <easybuild.framework.easyconfig.easyconfig.EasyConfig
object at
> 0x2932210>
> > == 2019-03-11 00:40:52,832 templates.py:175 DEBUG version
found in
> > easyconfig is 2.28
> > == 2019-03-11 00:40:52,832 templates.py:219 DEBUG name:
> github_account,
> > config: None
> > == 2019-03-11 00:40:52,832 templates.py:219 DEBUG name:
name,
> config:
> > binutils
> > == 2019-03-11 00:40:52,832 templates.py:219 DEBUG name:
version,
> config:
> > 2.28
> > == 2019-03-11 00:40:52,833 templates.py:219 DEBUG name:
> versionsuffix,
> > config:
> > == 2019-03-11 00:40:52,833 templates.py:219 DEBUG name:
> versionprefix,
> > config:
> > == 2019-03-11 00:40:52,833 templates.py:151 DEBUG config:
> > <easybuild.framework.easyconfig.easyconfig.EasyConfig
object at
> 0x2932210>
> > == 2019-03-11 00:40:52,833 templates.py:175 DEBUG version
found in
> > easyconfig is 2.28
> > == 2019-03-11 00:40:52,833 templates.py:219 DEBUG name:
> github_account,
> > config: None
> > == 2019-03-11 00:40:52,833 templates.py:219 DEBUG name:
name,
> config:
> > binutils
> > == 2019-03-11 00:40:52,833 templates.py:219 DEBUG name:
version,
> config:
> > 2.28
> > == 2019-03-11 00:40:52,833 templates.py:219 DEBUG name:
> versionsuffix,
> > config:
> > == 2019-03-11 00:40:52,833 templates.py:219 DEBUG name:
> versionprefix,
> > config:
> > == 2019-03-11 00:40:52,833 easyblock.py:2452 INFO Running
method
> > fetch_step part of step fetch
> > == 2019-03-11 00:40:52,834 easyblock.py:1557 WARNING
Easyconfig
> does not
> > specify an EasyBuild-version (key 'easybuild_version')!
Assuming the
> > latest version
> > == 2019-03-11 00:40:52,834 filetools.py:343 INFO Command
eb found at
> >
>
/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/bin/eb
> > == 2019-03-11 00:40:52,834 tools.py:263 DEBUG Also
considering
> > installation prefix
> >
>
/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0.
<http://3.5.0.>
> <http://3.5.0.>
> > <http://3.5.0.>..
> > == 2019-03-11 00:40:52,834 tools.py:268 DEBUG Checking for
> > easybuild/easyconfigs at
> >
>
/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_easyconfigs-3.5.0-py2.7.egg/easybuild/easyconfigs/easybuild/easyconfigs
> > == 2019-03-11 00:40:52,834 tools.py:268 DEBUG Checking for
> > easybuild/easyconfigs at easybuild/easyconfigs
> > == 2019-03-11 00:40:52,834 tools.py:268 DEBUG Checking for
> > easybuild/easyconfigs at
> >
>
/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/lib/python2.7/site-packages/vsc_install-0.10.26-py2.7.egg/easybuild/easyconfigs
> > == 2019-03-11 00:40:52,835 tools.py:268 DEBUG Checking for
> > easybuild/easyconfigs at
> >
>
/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/lib/python2.7/site-packages/vsc_base-2.5.8-py2.7.egg/easybuild/easyconfigs
> > == 2019-03-11 00:40:52,835 tools.py:268 DEBUG Checking for
> > easybuild/easyconfigs at
> >
>
/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_framework-3.5.0-py2.7.egg/easybuild/easyconfigs
> > == 2019-03-11 00:40:52,835 tools.py:268 DEBUG Checking for
> > easybuild/easyconfigs at
> >
>
/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_easyblocks-3.5.0-py2.7.egg/easybuild/easyconfigs
> > == 2019-03-11 00:40:52,835 tools.py:268 DEBUG Checking for
> > easybuild/easyconfigs at
> >
>
/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_easyconfigs-3.5.0-py2.7.egg/easybuild/easyconfigs
> > == 2019-03-11 00:40:52,835 tools.py:272 DEBUG Added
> >
>
/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_easyconfigs-3.5.0-py2.7.egg/easybuild/easyconfigs
>
> > to list of paths for easybuild/easyconfigs
> > == 2019-03-11 00:40:52,835 tools.py:268 DEBUG Checking for
> > easybuild/easyconfigs at
> >
>
/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild/easyconfigs
> > == 2019-03-11 00:40:52,836 tools.py:268 DEBUG Checking for
> > easybuild/easyconfigs at
> >
>
/sNow/easybuild/installation/lib/python2.7/site-packages/easybuild/easyconfigs
> > == 2019-03-11 00:40:52,836 tools.py:268 DEBUG Checking for
> > easybuild/easyconfigs at
> >
>
/sNow/easybuild/software/EasyBuild/3.2.1/lib/python2.7/site-packages/easybuild_easyconfigs-3.2.1-py2.7.egg/easybuild/easyconfigs/i/iimpi/easybuild/easyconfigs
> > == 2019-03-11 00:40:52,836 tools.py:268 DEBUG Checking for
> > easybuild/easyconfigs at
> /usr/lib64/python27.zip/easybuild/easyconfigs
> > == 2019-03-11 00:40:52,836 tools.py:268 DEBUG Checking for
> > easybuild/easyconfigs at
/usr/lib64/python2.7/easybuild/easyconfigs
> > == 2019-03-11 00:40:52,836 tools.py:268 DEBUG Checking for
> > easybuild/easyconfigs at
> > /usr/lib64/python2.7/plat-linux2/easybuild/easyconfigs
> > == 2019-03-11 00:40:52,836 tools.py:268 DEBUG Checking for
> > easybuild/easyconfigs at
> /usr/lib64/python2.7/lib-tk/easybuild/easyconfigs
> > == 2019-03-11 00:40:52,836 tools.py:268 DEBUG Checking for
> > easybuild/easyconfigs at
> /usr/lib64/python2.7/lib-old/easybuild/easyconfigs
> > == 2019-03-11 00:40:52,837 tools.py:268 DEBUG Checking for
> > easybuild/easyconfigs at
> > /usr/lib64/python2.7/lib-dynload/easybuild/easyconfigs
> > == 2019-03-11 00:40:52,837 tools.py:268 DEBUG Checking for
> > easybuild/easyconfigs at
> > /usr/lib64/python2.7/site-packages/easybuild/easyconfigs
> > == 2019-03-11 00:40:52,837 tools.py:268 DEBUG Checking for
> > easybuild/easyconfigs at
> > /usr/lib/python2.7/site-packages/easybuild/easyconfigs
> > == 2019-03-11 00:40:52,838 tools.py:268 DEBUG Checking for
> > easybuild/easyconfigs at
> >
>
/sNow/easybuild/installation/lib/python2.7/site-packages/easybuild/easyconfigs
> > == 2019-03-11 00:40:52,838 tools.py:268 DEBUG Checking for
> > easybuild/easyconfigs at
> >
>
/sNow/easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/easybuild/easyconfigs
> > == 2019-03-11 00:40:52,839 easyblock.py:646 INFO Found file
> > binutils-2.28.tar.gz at
> > /sNow/easybuild/sources/b/binutils/binutils-2.28.tar.gz
> > == 2019-03-11 00:40:52,839 easyblock.py:362 DEBUG File
> > /sNow/easybuild/sources/b/binutils/binutils-2.28.tar.gz
found for
> source
> > binutils-2.28.tar.gz
> > == 2019-03-11 00:40:52,839 easyblock.py:374 INFO Added
sources:
> > [{'path':
'/sNow/easybuild/sources/b/binutils/binutils-2.28.tar.gz',
> > 'cmd': None, 'finalpath':
> >
>
'/sNow/easybuild/centos/7.3.1611/Broadwell/build/binutils/2.28/dummy-',
> > 'name': 'binutils-2.28.tar.gz', 'checksum':
> >
'cd717966fc761d840d451dbd58d44e1e5b92949d2073d75b73fccb476d772fcf'}]
> > == 2019-03-11 00:40:52,839 easyblock.py:1598 INFO no
patches provided
> > == 2019-03-11 00:40:52,839 filetools.py:652 DEBUG Using
blocksize
> > 16777216 for calculating the checksum
> > == 2019-03-11 00:40:52,925 easyblock.py:1608 INFO md5
checksum for
> > /sNow/easybuild/sources/b/binutils/binutils-2.28.tar.gz:
> > d5d270fd0b698ed59ca5ade8e1b5059c
> > == 2019-03-11 00:40:52,925 filetools.py:652 DEBUG Using
blocksize
> > 16777216 for calculating the checksum
> > == 2019-03-11 00:40:53,059 easyblock.py:1608 INFO sha256
checksum
> for
> > /sNow/easybuild/sources/b/binutils/binutils-2.28.tar.gz:
> >
cd717966fc761d840d451dbd58d44e1e5b92949d2073d75b73fccb476d772fcf
> > == 2019-03-11 00:40:53,060 easyconfig.py:1676 DEBUG
Determining full
> > module name for
> <easybuild.framework.easyconfig.easyconfig.EasyConfig
> > object at 0x2932210> (force_visible: False)
> > == 2019-03-11 00:40:53,060 easyconfig.py:1656 DEBUG No
alternative
> > software name specified to determine module name with
> > == 2019-03-11 00:40:53,060 utilities.py:103 DEBUG Module
name
> > binutils/2.28 validated
> > == 2019-03-11 00:40:53,060 easyconfig.py:1683 DEBUG
Obtained
> valid full
> > module name binutils/2.28
> > == 2019-03-11 00:40:53,060 config.py:460 DEBUG modules
install
> path as
> > specified by 'installpath' and 'subdir_modules':
> > /sNow/easybuild/centos/7.3.1611/Broadwell/modules
> > == 2019-03-11 00:40:53,060 easyblock.py:1641 INFO Checking
dirs that
> > need to be created:
> >
['/sNow/easybuild/centos/7.3.1611/Broadwell/software/binutils/2.28',
> >
'/sNow/easybuild/centos/7.3.1611/Broadwell/modules/all/binutils',
> >
'/sNow/easybuild/centos/7.3.1611/Broadwell/modules/tools/binutils']
> > == 2019-03-11 00:40:53,061 filetools.py:1135 DEBUG Not
creating
> existing
> > path
/sNow/easybuild/centos/7.3.1611/Broadwell/software/binutils/2.28
> > == 2019-03-11 00:40:53,061 filetools.py:1135 DEBUG Not
creating
> existing
> > path
/sNow/easybuild/centos/7.3.1611/Broadwell/modules/all/binutils
> > == 2019-03-11 00:40:53,061 filetools.py:1135 DEBUG Not
creating
> existing
> > path
/sNow/easybuild/centos/7.3.1611/Broadwell/modules/tools/binutils
> > == 2019-03-11 00:40:53,061 easyblock.py:2438 DEBUG Not
skipping
> ready
> > step (skippable: False, skip: None, skipsteps: [],
module_only:
> False,
> > force: False
> > == 2019-03-11 00:40:53,062 build_log.py:233 INFO creating
build dir,
> > resetting environment...
> > == 2019-03-11 00:40:53,062 easyblock.py:2446 INFO Starting
ready step
> > == 2019-03-11 00:40:53,062 templates.py:151 DEBUG config:
> > <easybuild.framework.easyconfig.easyconfig.EasyConfig
object at
> 0x2932210>
> > == 2019-03-11 00:40:53,062 templates.py:175 DEBUG version
found in
> > easyconfig is 2.28
> > == 2019-03-11 00:40:53,062 templates.py:219 DEBUG name:
> github_account,
> > config: None
> > == 2019-03-11 00:40:53,062 templates.py:219 DEBUG name:
name,
> config:
> > binutils
> > == 2019-03-11 00:40:53,062 templates.py:219 DEBUG name:
version,
> config:
> > 2.28
> > == 2019-03-11 00:40:53,062 templates.py:219 DEBUG name:
> versionsuffix,
> > config:
> > == 2019-03-11 00:40:53,062 templates.py:219 DEBUG name:
> versionprefix,
> > config:
> > == 2019-03-11 00:40:53,062 templates.py:151 DEBUG config:
> > <easybuild.framework.easyconfig.easyconfig.EasyConfig
object at
> 0x2932210>
> > == 2019-03-11 00:40:53,063 templates.py:175 DEBUG version
found in
> > easyconfig is 2.28
> > == 2019-03-11 00:40:53,063 templates.py:219 DEBUG name:
> github_account,
> > config: None
> > == 2019-03-11 00:40:53,063 templates.py:219 DEBUG name:
name,
> config:
> > binutils
> > == 2019-03-11 00:40:53,063 templates.py:219 DEBUG name:
version,
> config:
> > 2.28
> > == 2019-03-11 00:40:53,063 templates.py:219 DEBUG name:
> versionsuffix,
> > config:
> > == 2019-03-11 00:40:53,063 templates.py:219 DEBUG name:
> versionprefix,
> > config:
> > == 2019-03-11 00:40:53,063 easyblock.py:2452 INFO Running
method
> > check_readiness_step part of step ready
> > == 2019-03-11 00:40:53,063 easyblock.py:1502 DEBUG Desired
> parallelism
> > specified via 'parallel' build option: None
> > == 2019-03-11 00:40:53,064 affinity.py:211 DEBUG
> sched_getaffinity for
> > pid 10580 returned cpuset 0
> > == 2019-03-11 00:40:53,064 run.py:163 DEBUG run_cmd:
running cmd
> ulimit
> > -u (in
> >
>
/sNow/easybuild/software/EasyBuild/3.2.1/lib/python2.7/site-packages/easybuild_easyconfigs-3.2.1-py2.7.egg/easybuild/easyconfigs/i/iimpi)
> > == 2019-03-11 00:40:53,064 run.py:183 INFO running cmd:
ulimit -u
> > == 2019-03-11 00:40:53,092 run.py:488 DEBUG cmd "ulimit -u"
> exited with
> > exit code 0 and output:
> > 515142
> >
> > == 2019-03-11 00:40:53,092 run.py:522 DEBUG Using default
regular
> > expression: (?<![(,-]|\w)(?:error|segmentation
> fault|failed)(?![(,-]|\.?\w)
> > == 2019-03-11 00:40:53,092 easyblock.py:1505 INFO Setting
> parallelism: 1
> > == 2019-03-11 00:40:53,092 modules.py:641 DEBUG Current
MODULEPATH:
> >
>
/sNow/easybuild/centos/7.3.1611/Broadwell/modules/all:/sNow/easybuild/modules/all:/sNow/easybuild/modulefiles/Linux:/sNow/easybuild/modulefiles/Core:/sNow/easybuild/lmod/lmod/modulefiles/Core
> > == 2019-03-11 00:40:53,093 modules.py:648 DEBUG Changing
> LD_LIBRARY_PATH
> > from
> >
>
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/zlib/1.2.11-foss-2016b/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/ScaLAPACK/2.0.2-gompi-2016b-OpenBLAS-0.2.18-LAPACK-3.6.1/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/FFTW/3.3.4-gompi-2016b/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/OpenBLAS/0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.1/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/OpenMPI/1.10.3-GCC-5.4.0-2.26/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/hwloc/1.11.3-GCC-5.4.0-2.26/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/numactl/2.0.11-GCC-5.4.0-2.26/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/binutils/2.26-GCCcore-5.4.0/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib/gcc/x86_64-unknown-linux-gnu/5.4.0:/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib64:/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib'
>
> > to
> >
>
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/zlib/1.2.11-foss-2016b/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/ScaLAPACK/2.0.2-gompi-2016b-OpenBLAS-0.2.18-LAPACK-3.6.1/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/FFTW/3.3.4-gompi-2016b/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/OpenBLAS/0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.1/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/OpenMPI/1.10.3-GCC-5.4.0-2.26/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/hwloc/1.11.3-GCC-5.4.0-2.26/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/numactl/2.0.11-GCC-5.4.0-2.26/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/binutils/2.26-GCCcore-5.4.0/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib/gcc/x86_64-unknown-linux-gnu/5.4.0:/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib64:/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib'
>
> > in environment for module command
> > == 2019-03-11 00:40:53,093 modules.py:648 DEBUG Changing
> LD_PRELOAD from
> > '' to '' in environment for module command
> > == 2019-03-11 00:40:53,093 modules.py:652 DEBUG Running
module
> command
> > '/sNow/easybuild/lmod/lmod/libexec/lmod python --terse
list' from
> >
>
/sNow/easybuild/software/EasyBuild/3.2.1/lib/python2.7/site-packages/easybuild_easyconfigs-3.2.1-py2.7.egg/easybuild/easyconfigs/i/iimpi
> > == 2019-03-11 00:40:53,144 modules.py:658 DEBUG Output of
module
> command
> > '/sNow/easybuild/lmod/lmod/libexec/lmod python --terse
list':
> stdout:
> > os.environ["MODULEPATH"] =
> >
>
"/sNow/easybuild/centos/7.3.1611/Broadwell/modules/all:/sNow/easybuild/modules/all:/sNow/easybuild/modulefiles/Linux:/sNow/easybuild/modulefiles/Core:/sNow/easybuild/lmod/lmod/modulefiles/Core";
> > os.environ["_ModuleTable001_"] =
> >
>
"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";
> > os.environ["_ModuleTable002_"] =
> >
>
"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";
> > os.environ["_ModuleTable003_"] =
> >
>
"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";
> > os.environ["_ModuleTable004_"] =
> >
>
"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";
> > os.environ["_ModuleTable005_"] =
> >
>
"LU9wZW5CTEFTLTAuMi4xOC1MQVBBQ0stMy42LjEubHVhIixbImZ1bGxOYW1lIl09IlNjYUxBUEFDSy8yLjAuMi1nb21waS0yMDE2Yi1PcGVuQkxBUy0wLjIuMTgtTEFQQUNLLTMuNi4xIixbImxvYWRPcmRlciJdPTExLHByb3BUPXt9LFsic3RhdHVzIl09ImFjdGl2ZSIsWyJ1c2VyTmFtZSJdPSJTY2FMQVBBQ0svMi4wLjItZ29tcGktMjAxNmItT3BlbkJMQVMtMC4yLjE4LUxBUEFDSy0zLjYuMSIsfSxiaW51dGlscz17WyJmbiJdPSIvc05vdy9lYXN5YnVpbGQvY2VudG9zLzcuMy4xNjExL0Jyb2Fkd2VsbC9tb2R1bGVzL2FsbC9iaW51dGlscy8yLjI2LUdDQ2NvcmUtNS40LjAubHVhIixbImZ1bGxOYW1lIl09ImJpbnV0aWxzLzIuMjYtR0NDY29yZS01LjQuMCIsWyJsb2FkT3Jk";
> > os.environ["_ModuleTable006_"] =
> >
>
"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";
> > os.environ["_ModuleTable007_"] =
> >
>
"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";
> > os.environ["_ModuleTable008_"] =
> >
>
"MC4xMS1HQ0MtNS40LjAtMi4yNi5sdWEiLFsiZnVsbE5hbWUiXT0ibnVtYWN0bC8yLjAuMTEtR0NDLTUuNC4wLTIuMjYiLFsibG9hZE9yZGVyIl09NSxwcm9wVD17fSxbInN0YXR1cyJdPSJhY3RpdmUiLFsidXNlck5hbWUiXT0ibnVtYWN0bC8yLjAuMTEtR0NDLTUuNC4wLTIuMjYiLH0semxpYj17WyJmbiJdPSIvc05vdy9lYXN5YnVpbGQvY2VudG9zLzcuMy4xNjExL0Jyb2Fkd2VsbC9tb2R1bGVzL2FsbC96bGliLzEuMi4xMS1mb3NzLTIwMTZiLmx1YSIsWyJmdWxsTmFtZSJdPSJ6bGliLzEuMi4xMS1mb3NzLTIwMTZiIixbImxvYWRPcmRlciJdPTEzLHByb3BUPXt9LFsic3RhdHVzIl09ImFjdGl2ZSIsWyJ1c2VyTmFtZSJdPSJ6bGliLzEuMi4xMS1mb3NzLTIwMTZiIix9LH0s";
> > os.environ["_ModuleTable009_"] =
> >
>
"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";
> > os.environ["_ModuleTable010_"] =
> >
"Tm93L2Vhc3lidWlsZC9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==";
> > os.environ["_ModuleTable_Sz_"] = "10";
> > ; stderr: EasyBuild/3.5.0
> > GCCcore/5.4.0
> > binutils/2.26-GCCcore-5.4.0
> > GCC/5.4.0-2.26
> > numactl/2.0.11-GCC-5.4.0-2.26
> > hwloc/1.11.3-GCC-5.4.0-2.26
> > OpenMPI/1.10.3-GCC-5.4.0-2.26
> > OpenBLAS/0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.1
> > gompi/2016b
> > FFTW/3.3.4-gompi-2016b
> > ScaLAPACK/2.0.2-gompi-2016b-OpenBLAS-0.2.18-LAPACK-3.6.1
> > foss/2016b
> > zlib/1.2.11-foss-2016b
> >
> > == 2019-03-11 00:40:53,144 modules.py:1109 DEBUG Output
found in
> stdout,
> > seems like '/sNow/easybuild/lmod/lmod/libexec/lmod python
--terse
> list'
> > ran fine
> > == 2019-03-11 00:40:53,144 modules.py:695 DEBUG Correcting
paths in
> > $LD_LIBRARY_PATH from
> >
>
['/sNow/easybuild/centos/7.3.1611/Broadwell/software/zlib/1.2.11-foss-2016b/lib',
>
> >
>
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/ScaLAPACK/2.0.2-gompi-2016b-OpenBLAS-0.2.18-LAPACK-3.6.1/lib',
>
> >
>
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/FFTW/3.3.4-gompi-2016b/lib',
>
> >
>
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/OpenBLAS/0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.1/lib',
>
> >
>
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/OpenMPI/1.10.3-GCC-5.4.0-2.26/lib',
>
> >
>
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/hwloc/1.11.3-GCC-5.4.0-2.26/lib',
>
> >
>
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/numactl/2.0.11-GCC-5.4.0-2.26/lib',
>
> >
>
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/binutils/2.26-GCCcore-5.4.0/lib',
>
> >
>
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib/gcc/x86_64-unknown-linux-gnu/5.4.0',
>
> >
>
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib64',
>
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib']
> > to
> >
>
['/sNow/easybuild/centos/7.3.1611/Broadwell/software/zlib/1.2.11-foss-2016b/lib',
>
> >
>
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/ScaLAPACK/2.0.2-gompi-2016b-OpenBLAS-0.2.18-LAPACK-3.6.1/lib',
>
> >
>
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/FFTW/3.3.4-gompi-2016b/lib',
>
> >
>
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/OpenBLAS/0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.1/lib',
>
> >
>
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/OpenMPI/1.10.3-GCC-5.4.0-2.26/lib',
>
> >
>
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/hwloc/1.11.3-GCC-5.4.0-2.26/lib',
>
> >
>
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/numactl/2.0.11-GCC-5.4.0-2.26/lib',
>
> >
>
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/binutils/2.26-GCCcore-5.4.0/lib',
>
> >
>
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib/gcc/x86_64-unknown-linux-gnu/5.4.0',
>
> >
>
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib64',
>
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib']
> > == 2019-03-11 00:40:53,145 environment.py:97 INFO
Environment
> variable
> > LD_LIBRARY_PATH set to
> >
>
/sNow/easybuild/centos/7.3.1611/Broadwell/software/zlib/1.2.11-foss-2016b/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/ScaLAPACK/2.0.2-gompi-2016b-OpenBLAS-0.2.18-LAPACK-3.6.1/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/FFTW/3.3.4-gompi-2016b/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/OpenBLAS/0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.1/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/OpenMPI/1.10.3-GCC-5.4.0-2.26/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/hwloc/1.11.3-GCC-5.4.0-2.26/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/numactl/2.0.11-GCC-5.4.0-2.26/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/binutils/2.26-GCCcore-5.4.0/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib/gcc/x86_64-unknown-linux-gnu/5.4.0:/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib64:/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib
>
> > (previous value:
> >
>
'/sNow/easybuild/centos/7.3.1611/Broadwell/software/zlib/1.2.11-foss-2016b/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/ScaLAPACK/2.0.2-gompi-2016b-OpenBLAS-0.2.18-LAPACK-3.6.1/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/FFTW/3.3.4-gompi-2016b/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/OpenBLAS/0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.1/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/OpenMPI/1.10.3-GCC-5.4.0-2.26/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/hwloc/1.11.3-GCC-5.4.0-2.26/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/numactl/2.0.11-GCC-5.4.0-2.26/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/binutils/2.26-GCCcore-5.4.0/lib:/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib/gcc/x86_64-unknown-linux-gnu/5.4.0:/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib64:/sNow/easybuild/centos/7.3.1611/Broadwell/software/GCCcore/5.4.0/lib')
> > == 2019-03-11 00:40:53,145 modules.py:695 DEBUG Correcting
paths in
> > $LD_PRELOAD from [''] to []
> > == 2019-03-11 00:40:53,145 environment.py:97 INFO
Environment
> variable
> > LD_PRELOAD set to (previous value: '')
> > == 2019-03-11 00:40:53,145 easyblock.py:1510 WARNING
Loaded modules
> > detected: ['EasyBuild/3.5.0', 'GCCcore/5.4.0',
> > 'binutils/2.26-GCCcore-5.4.0', 'GCC/5.4.0-2.26',
> > 'numactl/2.0.11-GCC-5.4.0-2.26',
'hwloc/1.11.3-GCC-5.4.0-2.26',
> > 'OpenMPI/1.10.3-GCC-5.4.0-2.26',
> > 'OpenBLAS/0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.1',
'gompi/2016b',
> > 'FFTW/3.3.4-gompi-2016b',
> > 'ScaLAPACK/2.0.2-gompi-2016b-OpenBLAS-0.2.18-LAPACK-3.6.1',
> > 'foss/2016b', 'zlib/1.2.11-foss-2016b']
> > == 2019-03-11 00:40:53,145 utilities.py:101 DEBUG Skipping
> importing of
> > toolchain modules, processing of toolchain constants is
already done.
> > == 2019-03-11 00:40:53,146 systemtools.py:211 DEBUG
Determined CPU
> > architecture: x86_64
> > == 2019-03-11 00:40:53,146 systemtools.py:211 DEBUG
Determined CPU
> > architecture: x86_64
> > == 2019-03-11 00:40:53,146 systemtools.py:247 DEBUG
Determined CPU
> > vendor on Linux as being 'Intel' via regex
> 'vendor_id\s+:\s*(\S+)' in
> > /proc/cpuinfo
> > == 2019-03-11 00:40:53,146 systemtools.py:273 DEBUG Using
vendor
> as CPU
> > family: Intel
> > == 2019-03-11 00:40:53,147 utilities.py:140 DEBUG
Obtained new
> toolchain
> > instance for ('dummy', ''): {'dummy': True,
'versionsuffix': '',
> > 'version': '', 'toolchain': {'version': 'dummy', 'name':
'dummy'},
> > 'name': 'dummy', 'full_mod_name': None, 'hidden': False,
> 'parsed': True,
> > 'short_mod_name': None}
> > == 2019-03-11 00:40:53,147 options.py:64 DEBUG Using
toolchain
> options
> > {'precise': (False, 'High precision'), 'verbose': (False,
'Verbose
> > output'), 'rpath': (True, 'Use RPATH wrappers when
--rpath is
> enabled in
> > EasyBuild configuration'), 'pic': (False, 'Use PIC'),
'static':
> (False,
> > 'Build static library'), 'optarch': (True, 'Enable
architecture
> > optimizations'), 'ieee': (False, 'Adhere to IEEE-754
rules'),
> > 'veryloose': (False, 'Very loose precision'), 'strict':
(False,
> 'Strict
> > (highest) precision'), 'unroll': (False, 'Unroll loops'),
'lowopt':
> > (False, 'Low compiler optimizations'), 'shared': (False,
'Build
> shared
> > library'), 'opt': (False, 'High compiler optimizations'),
'i8':
> (False,
> > 'Integers are 8 byte integers'), 'loose': (False, 'Loose
> precision'),
> > 'cstd': (None, 'Specify C standard'), 'defaultprec':
(False,
> 'Default
> > precision'), 'openmp': (False, 'Enable OpenMP'), 'noopt':
(False,
> > 'Disable compiler optimizations'),
'packed-linker-options': (False,
> > 'Pack the linker options as comma separated list'), 'r8':
(False,
> 'Real
> > is 8 byte real'), 'cciscxx': (False, 'Use CC as CXX'),
'32bit':
> (False,
> > 'Compile 32bit target'), 'debug': (False, 'Enable debug'),
> 'defaultopt':
> > (False, 'Default compiler optimizations')}
> > == 2019-03-11 00:40:53,147 easyconfig.py:666 DEBUG
Initialized
> > toolchain: {'dummy': True, 'versionsuffix': '',
'version': '',
> > 'toolchain': {'version': 'dummy', 'name': 'dummy'},
'name': 'dummy',
> > 'full_mod_name': None, 'hidden': False, 'parsed': True,
> > 'short_mod_name': None} (opts: None)
> > == 2019-03-11 00:40:53,147 easyconfig.py:608 DEBUG
Dependencies
> BEFORE
> > filtering: [{'external_module_metadata': {},
'full_mod_name':
> > 'flex/2.6.3', 'toolchain': {'version': '', 'name':
'dummy'}, 'name':
> > 'flex', 'dummy': True, 'short_mod_name': 'flex/2.6.3',
> > 'external_module': False, 'versionsuffix': '', 'version':
'2.6.3',
> > 'toolchain_inherited': True, 'hidden': False,
'build_only': True},
> > {'external_module_metadata': {}, 'full_mod_name':
'Bison/3.0.4',
> > 'toolchain': {'version': '', 'name': 'dummy'}, 'name':
'Bison',
> 'dummy':
> > True, 'short_mod_name': 'Bison/3.0.4', 'external_module':
False,
> > 'versionsuffix': '', 'version': '3.0.4',
'toolchain_inherited':
> True,
> > 'hidden': False, 'build_only': True},
> {'external_module_metadata': {},
> > 'full_mod_name': 'zlib/1.2.11', 'toolchain': {'version':
'', 'name':
> > 'dummy'}, 'name': 'zlib', 'dummy': True, 'short_mod_name':
> > 'zlib/1.2.11', 'external_module': False,
'versionsuffix': '',
> 'version':
> > '1.2.11', 'toolchain_inherited': True, 'hidden': False,
> 'build_only': True}]
> > == 2019-03-11 00:40:53,147 toolchain.py:376 DEBUG
add_dependencies:
> > adding toolchain dependencies
[{'external_module_metadata': {},
> > 'full_mod_name': 'flex/2.6.3', 'toolchain': {'version':
'', 'name':
> > 'dummy'}, 'name': 'flex', 'dummy': True, 'short_mod_name':
> 'flex/2.6.3',
> > 'external_module': False, 'versionsuffix': '', 'version':
'2.6.3',
> > 'toolchain_inherited': True, 'hidden': False,
'build_only': True},
> > {'external_module_metadata': {}, 'full_mod_name':
'Bison/3.0.4',
> > 'toolchain': {'version': '', 'name': 'dummy'}, 'name':
'Bison',
> 'dummy':
> > True, 'short_mod_name': 'Bison/3.0.4', 'external_module':
False,
> > 'versionsuffix': '', 'version': '3.0.4',
'toolchain_inherited':
> True,
> > 'hidden': False, 'build_only': True},
> {'external_module_metadata': {},
> > 'full_mod_name': 'zlib/1.2.11', 'toolchain': {'version':
'', 'name':
> > 'dummy'}, 'name': 'zlib', 'dummy': True, 'short_mod_name':
> > 'zlib/1.2.11', 'external_module': False,
'versionsuffix': '',
> 'version':
> > '1.2.11', 'toolchain_inherited': True, 'hidden': False,
> 'build_only': True}]
> > == 2019-03-11 00:40:53,148 toolchain.py:386 DEBUG
add_dependencies:
> > MODULEPATH:
> >
>
/sNow/easybuild/centos/7.3.1611/Broadwell/modules/all:/sNow/easybuild/modules/all:/sNow/easybuild/modulefiles/Linux:/sNow/easybuild/modulefiles/Core:/sNow/easybuild/lmod/lmod/modulefiles/Core
> > == 2019-03-11 00:40:53,148 modules.py:422 DEBUG Found
cached
> result for
> > 'module avail' with key
> >
>
'('MODULEPATH=/sNow/easybuild/centos/7.3.1611/Broadwell/modules/all:/sNow/easybuild/modules/all:/sNow/easybuild/modulefiles/Linux:/sNow/easybuild/modulefiles/Core:/sNow/easybuild/lmod/lmod/modulefiles/Core',
>
> > 'lmod', '--show-hidden')': ['ANSYS/18.1',
'ATK/2.22.0-foss-2016b',
> > 'Advisor/2017_update2', 'Anaconda3/4.0.0', 'Autoconf/2.69',
> > 'Autoconf/2.69-GCCcore-6.3.0',
'Autoconf/2.69-GNU-4.9.3-2.25',
> > 'Autoconf/2.69-foss-2016a', 'Autoconf/2.69-foss-2016b',
> > 'Autoconf/2.69-foss-2017a', 'Autoconf/2.69-intel-2017a',
> > 'Automake/1.15', 'Automake/1.15-GCCcore-6.3.0',
> > 'Automake/1.15-GNU-4.9.3-2.25', 'Automake/1.15-foss-2016a',
> > 'Automake/1.15-foss-2016b', 'Automake/1.15-foss-2017a',
> > 'Automake/1.15-intel-2017a', 'Autotools/20150215',
> > 'Autotools/20150215-GCCcore-6.3.0',
> 'Autotools/20150215-GNU-4.9.3-2.25',
> > 'Autotools/20150215-foss-2016a',
'Autotools/20150215-foss-2016b',
> > 'Autotools/20150215-foss-2017a',
'Autotools/20150215-intel-2017a',
> > 'Bison/3.0.4', 'Bison/3.0.4-GCC-4.9.2',
> > 'Bison/3.0.4-GCC-4.9.3-binutils-2.25',
'Bison/3.0.4-GCCcore-4.9.3',
> > 'Bison/3.0.4-GCCcore-5.4.0', 'Bison/3.0.4-GCCcore-6.3.0',
> > 'Bison/3.0.4-foss-2016a', 'Bison/3.0.4-foss-2016b',
> > 'Bison/3.0.4-foss-2017a', 'Bison/3.0.4-intel-2017a',
> > 'Boost/1.61.0-foss-2016b', 'Boost/1.61.0-foss-2017a',
> > 'Boost/1.63.0-intel-2017a-Python-2.7.13',
'CGAL/4.8.1-foss-2016b',
> > 'CMake/3.4.3-foss-2016a', 'CMake/3.4.3-foss-2016b',
> > 'CMake/3.5.2-foss-2016b', 'CMake/3.6.1-foss-2016b',
> > 'CMake/3.6.1-foss-2017a', 'CMake/3.7.1-foss-2016b',
> > 'CMake/3.7.2-GCCcore-6.3.0', 'CMake/3.8.0-GCCcore-6.3.0',
> > 'CMake/3.8.1-GCCcore-6.3.0', 'CUDA/8.0.61',
> 'CUDA/8.0.61-foss-2016b',
> > 'Cube/4.3.4-foss-2016a', 'Cube/4.3.4-foss-2016b',
> > 'Doxygen/1.8.11-foss-2016b', 'EasyBuild/3.2.1',
'EasyBuild/3.3.1',
> > 'EasyBuild/3.5.0', 'Eigen/3.2.9-foss-2016b',
> 'Eigen/3.2.9-foss-2017a',
> > 'FFTW/3.3.4-gompi-2016a', 'FFTW/3.3.4-gompi-2016b',
> > 'FFTW/3.3.6-gompi-2017a', 'FFmpeg/3.1.3-foss-2016b',
> > 'FLTK/1.3.3-foss-2016a', 'FLTK/1.3.3-foss-2016b',
> > 'FLTK/1.3.4-intel-2017a', 'GCC/4.7.2', 'GCC/4.8.4',
'GCC/4.9.2',
> > 'GCC/4.9.2-binutils-2.25', 'GCC/4.9.3-2.25',
> 'GCC/4.9.3-binutils-2.25',
> > 'GCC/5.4.0-2.26', 'GCC/6.3.0-2.27', 'GCCcore/4.9.3',
> 'GCCcore/5.4.0',
> > 'GCCcore/5.4.0-foss-2016b', 'GCCcore/6.3.0',
> 'GDAL/2.1.0-foss-2016b',
> > 'GL2PS/1.3.9-foss-2016a', 'GL2PS/1.3.9-foss-2016b',
> > 'GL2PS/1.4.0-intel-2017a', 'GLPK/4.58-foss-2016a',
> > 'GLPK/4.58-foss-2016b', 'GLPK/4.60-foss-2016b',
> 'GLPK/4.60-foss-2017a',
> > 'GLPK/4.60-intel-2017a', 'GLPK/4.61-intel-2017a',
> > 'GLib/2.47.5-foss-2016a', 'GLib/2.47.5-foss-2016b',
> > 'GLib/2.49.5-foss-2016b', 'GLib/2.52.0-intel-2017a',
> > 'GLib/2.53.5-GCCcore-6.3.0', 'GMP/6.0.0a-GNU-4.9.3-2.25',
> > 'GMP/6.1.0-foss-2016a', 'GMP/6.1.0-foss-2016b',
> 'GMP/6.1.0-foss-2017a',
> > 'GMP/6.1.1-foss-2016b', 'GMP/6.1.1-foss-2017a',
> 'GMP/6.1.1-intel-2017a',
> > 'GMP/6.1.2-GCCcore-6.3.0', 'GNU/4.9.3-2.25',
> > 'GObject-Introspection/1.47.1-foss-2016a',
> > 'GObject-Introspection/1.47.1-foss-2016b',
> > 'GObject-Introspection/1.49.1-foss-2016b',
> 'GTK+/2.24.31-foss-2016b',
> > 'Gdk-Pixbuf/2.36.0-foss-2016b', 'Go/1.8.1',
> > 'GraphicsMagick/1.3.23-foss-2016a',
'HDF5/1.8.16-foss-2016a-serial',
> > 'HDF5/1.8.16-foss-2016b-serial', 'HDF5/1.8.17-foss-2016b',
> > 'HDF5/1.8.18-intel-2017a-serial', 'HPCG/2.1-foss-2017a',
> > 'HPL/2.2-foss-2017a', 'HarfBuzz/1.1.3-foss-2016a',
> > 'HarfBuzz/1.3.1-foss-2016b', 'Iperf/2.0.5-foss-2016b',
> > 'JUnit/4.11-Java-1.7.0_21', 'JUnit/4.12-Java-1.8.0_92',
> > 'JasPer/1.900.1-foss-2016a', 'JasPer/1.900.1-foss-2016b',
> > 'Java/1.7.0_21', 'Java/1.8.0_121',
'Java/1.8.0_121-foss-2016b',
> > 'Java/1.8.0_131', 'Java/1.8.0_144-foss-2017a',
'Java/1.8.0_72',
> > 'Java/1.8.0_92', 'Java/1.8.0_92-foss-2016b',
> 'LLVM/3.7.1-foss-2016a',
> > 'LLVM/3.7.1-foss-2016b', 'LLVM/3.8.1-foss-2016b',
> > 'LLVM/4.0.0-foss-2017a', 'LLVM/4.0.0-intel-2017a',
> > 'LibTIFF/4.0.6-foss-2016a', 'LibTIFF/4.0.6-foss-2016b',
> 'Lua/5.1.4-8',
> > 'M4/1.4.17', 'M4/1.4.17-GCC-4.9.2',
> 'M4/1.4.17-GCC-4.9.3-binutils-2.25',
> > 'M4/1.4.17-GCCcore-4.9.3', 'M4/1.4.17-GCCcore-5.4.0',
> > 'M4/1.4.17-GNU-4.9.3-2.25', 'M4/1.4.17-foss-2016a',
> > 'M4/1.4.17-foss-2016b', 'M4/1.4.17-foss-2017a',
> 'M4/1.4.17-intel-2017a',
> > 'M4/1.4.18', 'M4/1.4.18-GCCcore-6.3.0',
'M4/1.4.18-foss-2016b',
> > 'MATLAB/2018b', 'METIS/5.1.0-foss-2016a',
'METIS/5.1.0-foss-2016b',
> > 'METIS/5.1.0-foss-2017a', 'METIS/5.1.0-intel-2017a',
> > 'MPFR/3.1.4-foss-2016b', 'MPFR/3.1.4-foss-2017a',
> > 'Mako/1.0.4-foss-2016b-Python-2.7.12',
> > 'Mako/1.0.4-foss-2017a-Python-2.7.13',
> > 'Mako/1.0.6-intel-2017a-Python-2.7.13',
'Mesa/11.1.2-foss-2016a',
> > 'Mesa/12.0.2-foss-2016b', 'Mesa/17.0.2-intel-2017a',
> > 'NASM/2.11.08-foss-2016a', 'NASM/2.11.08-foss-2016b',
> > 'NASM/2.12.01-foss-2016a', 'NASM/2.12.01-foss-2017a',
> > 'NASM/2.12.02-foss-2016b', 'NASM/2.12.02-foss-2017a',
> > 'NASM/2.12.02-intel-2017a', 'NASM/2.13.01-GCCcore-6.3.0',
> > 'NLTK/3.2.2-foss-2016a-Python-3.5.1',
> > 'NLTK/3.2.2-intel-2017a-Python-2.7.13',
'OPARI2/1.1.2-foss-2017a',
> > 'OPARI2/2.0-foss-2016a', 'OPARI2/2.0-foss-2016b',
> 'OTF2/2.0-foss-2016a',
> > 'OTF2/2.0-foss-2016b', 'Octave/4.0.0-foss-2016a',
> > 'OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0',
> > 'OpenBLAS/0.2.18-GCC-5.4.0-2.26-LAPACK-3.6.1',
> > 'OpenBLAS/0.2.19-GCC-6.3.0-2.27-LAPACK-3.7.0',
> > 'OpenCV/3.1.0-foss-2016b', 'OpenFOAM/4.0-foss-2016b',
> > 'OpenMPI/1.10.2-GCC-4.9.3-2.25',
'OpenMPI/1.10.3-GCC-5.4.0-2.26',
> > 'OpenMPI/1.6.4-GCC-4.7.2', 'OpenMPI/2.0.2-GCC-6.3.0-2.27',
> > 'OpenSSL/1.0.1p-foss-2017a', 'OpenSSL/1.0.1q-foss-2017a',
> > 'OpenSSL/1.0.1s-foss-2016b', 'OpenSSL/1.0.1s-foss-2017a',
> > 'OpenSSL/1.0.2h-foss-2017a', 'OpenSSL/1.1.0e-foss-2016b',
> > 'PAPI/5.4.3-foss-2016a', 'PAPI/5.4.3-foss-2016b',
> > 'PCRE/8.38-foss-2016a', 'PCRE/8.38-foss-2016b',
> 'PCRE/8.38-foss-2017a',
> > 'PCRE/8.39-foss-2016b', 'PCRE/8.39-foss-2017a',
> 'PCRE/8.39-intel-2017a',
> > 'PCRE/8.40-intel-2017a', 'PCRE/8.41-GCCcore-6.3.0',
> > 'PDT/3.22-foss-2016a', 'PROJ/4.9.2-foss-2016b',
> > 'Pango/1.39.0-foss-2016a', 'Pango/1.40.3-foss-2016b',
> > 'ParaView/5.2.0-foss-2016b-mpi',
> > 'Pillow/3.2.0-foss-2016a-Python-2.7.11-freetype-2.6.3',
> > 'PyCUDA/2016.1.2-intel-2017a-Python-2.7.13',
> 'Python/2.7.11-foss-2016a',
> > 'Python/2.7.11-foss-2016b', 'Python/2.7.12-foss-2016b',
> > 'Python/2.7.13-GCCcore-6.3.0-bare',
'Python/2.7.13-foss-2017a',
> > 'Python/2.7.13-intel-2017a', 'Python/3.5.1-foss-2016a',
> > 'Qhull/2015.2-foss-2016a', 'Qhull/2015.2-foss-2016b',
> > 'Qhull/2015.2-foss-2017a', 'Qhull/2015.2-intel-2017a',
> > 'Qt/4.8.7-foss-2016a', 'Qt/4.8.7-foss-2016b',
> 'Qt/4.8.7-intel-2017a',
> > 'Qt5/5.8.0-foss-2016b', 'Qt5/5.8.0-intel-2017a',
> > 'QuantumESPRESSO/5.4.0-foss-2016b-hybrid',
> 'SCOTCH/6.0.4-foss-2016b',
> > 'SCOTCH/6.0.4-foss-2017a',
'SIONlib/1.6.1-foss-2016a-tools',
> > 'SIONlib/1.6.1-foss-2016b-tools',
'SQLite/3.13.0-foss-2016b',
> > 'SQLite/3.13.0-foss-2017a', 'SQLite/3.17.0-GCCcore-6.3.0',
> > 'SQLite/3.8.10.2-foss-2016b', 'SQLite/3.9.2-foss-2016a',
> > 'SQLite/3.9.2-foss-2016b', 'SQLite/3.9.2-foss-2017a',
> > 'ScaLAPACK/2.0.2-gompi-2016a-OpenBLAS-0.2.15-LAPACK-3.6.0',
> > 'ScaLAPACK/2.0.2-gompi-2016b-OpenBLAS-0.2.18-LAPACK-3.6.1',
> > 'ScaLAPACK/2.0.2-gompi-2017a-OpenBLAS-0.2.19-LAPACK-3.7.0',
> > 'Szip/2.1-foss-2016a', 'Szip/2.1-foss-2016b',
'Szip/2.1-foss-2017a',
> > 'Szip/2.1-intel-2017a', 'Tcl/8.5.12-foss-2016b',
> 'Tcl/8.6.4-foss-2016a',
> > 'Tcl/8.6.4-foss-2016b', 'Tcl/8.6.4-foss-2017a',
> 'Tcl/8.6.5-foss-2016b',
> > 'Tcl/8.6.5-foss-2017a', 'Tcl/8.6.6-GCCcore-6.3.0',
> > 'Tensorflow/0.12.1-foss-2016b-Python-2.7.12',
> 'Tk/8.5.12-foss-2016b',
> > 'Tk/8.6.4-foss-2016a-no-X11', 'Tk/8.6.4-foss-2016b-no-X11',
> > 'Tk/8.6.4-foss-2017a-no-X11', 'Tk/8.6.5-foss-2016b',
> > 'Tk/8.6.5-foss-2017a', 'VTune/2017_update2',
> 'X11/20160819-foss-2016b',
> > 'X11/20160819-foss-2017a', 'X11/20170314-GCCcore-6.3.0',
> > 'XZ/5.2.2-foss-2016a', 'XZ/5.2.2-foss-2016b',
'XZ/5.2.2-foss-2017a',
> > 'XZ/5.2.2-intel-2017a', 'XZ/5.2.3-GCCcore-6.3.0',
> 'XZ/5.2.3-foss-2017a',
> > 'Yasm/1.3.0-foss-2016b', 'ant/1.9.7-Java-1.8.0_92',
> > 'arpack-ng/3.3.0-foss-2016a', 'arpack-ng/3.3.0-foss-2016b',
> > 'arpack-ng/3.3.0-foss-2017a', 'arpack-ng/3.4.0-foss-2016b',
> > 'arpack-ng/3.4.0-foss-2017a',
'arpack-ng/3.4.0-intel-2017a',
> > 'arpack-ng/3.5.0-intel-2017a', 'binutils/2.25',
> > 'binutils/2.25-GCC-4.9.3-binutils-2.25',
> 'binutils/2.25-GCCcore-4.9.3',
> > 'binutils/2.26', 'binutils/2.26-GCCcore-5.4.0',
> > 'binutils/2.26-foss-2016b', 'binutils/2.27',
> > 'binutils/2.27-GCCcore-6.3.0', 'bzip2/1.0.6-GCCcore-6.3.0',
> > 'bzip2/1.0.6-foss-2016a', 'bzip2/1.0.6-foss-2016b',
> > 'bzip2/1.0.6-foss-2017a', 'bzip2/1.0.6-intel-2017a',
> > 'cURL/7.47.0-foss-2016a', 'cURL/7.47.0-foss-2016b',
> > 'cURL/7.47.0-foss-2017a', 'cURL/7.49.1-foss-2016b',
> > 'cURL/7.52.1-foss-2016b', 'cURL/7.52.1-foss-2017a',
> > 'cURL/7.52.1-intel-2017a', 'cURL/7.53.1-GCCcore-6.3.0',
> > 'cairo/1.14.6-foss-2016a', 'cairo/1.14.6-foss-2016b',
> > 'cairo/1.14.8-intel-2017a', 'cuDNN/6.0-CUDA-8.0.61',
> > 'damageproto/1.2.1-foss-2016a',
'damageproto/1.2.1-foss-2016b',
> > 'eudev/3.1.5-foss-2016a', 'expat/2.1.0-foss-2016a',
> > 'expat/2.1.0-foss-2016b', 'expat/2.2.0-GCCcore-6.3.0',
> > 'expat/2.2.0-foss-2016b', 'expat/2.2.0-foss-2017a',
> > 'expat/2.2.0-intel-2017a', 'fixesproto/5.0-foss-2016a',
> > 'fixesproto/5.0-foss-2016b', 'flex/2.5.39',
> > 'flex/2.5.39-GCC-4.9.3-binutils-2.25',
'flex/2.5.39-GCCcore-4.9.3',
> > 'flex/2.6.0', 'flex/2.6.0-GCC-4.9.2',
'flex/2.6.0-GCCcore-5.4.0',
> > 'flex/2.6.0-foss-2016a', 'flex/2.6.0-foss-2016b',
> > 'flex/2.6.0-foss-2017a', 'flex/2.6.3',
'flex/2.6.3-GCCcore-6.3.0',
> > 'flex/2.6.3-foss-2016b', 'flex/2.6.4-GCCcore-6.3.0',
> > 'fontconfig/2.11.94-foss-2016a',
'fontconfig/2.11.94-foss-2016b',
> > 'fontconfig/2.12.1-GCCcore-6.3.0-libpng-1.6.29',
> > 'fontconfig/2.12.1-foss-2016b',
'fontconfig/2.12.1-foss-2017a',
> > 'fontconfig/2.12.1-intel-2017a',
'fontsproto/2.1.3-foss-2016a',
> > 'fontsproto/2.1.3-foss-2016b', 'foss/2016a', 'foss/2016b',
> 'foss/2017a',
> > 'freeglut/3.0.0-foss-2016a', 'freeglut/3.0.0-foss-2016b',
> > 'freeglut/3.0.0-intel-2017a', 'freetype/2.6.2-foss-2016a',
> > 'freetype/2.6.2-foss-2016b', 'freetype/2.6.3-foss-2016a',
> > 'freetype/2.6.5-foss-2016b', 'freetype/2.6.5-foss-2017a',
> > 'freetype/2.6.5-intel-2017a', 'freetype/2.7-foss-2016b',
> > 'freetype/2.7.1-GCCcore-6.3.0-libpng-1.6.29',
> > 'gensim/0.13.2-foss-2016a-Python-2.7.11', 'gettext/0.19.6',
> > 'gettext/0.19.6-foss-2016a', 'gettext/0.19.6-foss-2016b',
> > 'gettext/0.19.6-foss-2017a', 'gettext/0.19.8',
> > 'gettext/0.19.8-foss-2016b', 'gettext/0.19.8-foss-2017a',
> > 'gettext/0.19.8.1 <http://0.19.8.1> <http://0.19.8.1>
<http://0.19.8.1>',
> 'gettext/0.19.8.1-GCCcore-6.3.0',
> > 'glproto/1.4.17-foss-2016a', 'gnuplot/5.0.3-foss-2016a',
> > 'gnuplot/5.0.5-foss-2016b', 'gompi/1.4.10', 'gompi/2016a',
> > 'gompi/2016b', 'gompi/2017a', 'gperf/3.0.4-foss-2016a',
> > 'gperf/3.0.4-foss-2017a', 'help2man/1.47.4',
> > 'help2man/1.47.4-GCCcore-6.3.0',
'help2man/1.47.4-foss-2016b',
> > 'hwloc/1.11.2-GCC-4.9.3-2.25',
'hwloc/1.11.3-GCC-5.4.0-2.26',
> > 'hwloc/1.11.5-GCC-6.3.0-2.27', 'hwloc/1.6.2-GCC-4.7.2',
> > 'icc/2017.1.132-GCC-6.3.0-2.27',
> 'iccifort/2017.1.132-GCC-6.3.0-2.27',
> > 'ifort/2017.1.132-GCC-6.3.0-2.27', 'iimpi/2017a',
> > 'imkl/2017.1.132-iimpi-2017a',
> > 'impi/2017.1.132-iccifort-2017.1.132-GCC-6.3.0-2.27',
> > 'inputproto/2.3.1-foss-2016a',
'inputproto/2.3.1-foss-2016b',
> > 'inputproto/2.3.1-foss-2017a', 'intel/2017a',
'itac/2017.2.028',
> > 'kbproto/1.0.7-foss-2016a', 'kbproto/1.0.7-foss-2016b',
> > 'kbproto/1.0.7-foss-2017a', 'libGLU/9.0.0-foss-2016a',
> > 'libGLU/9.0.0-foss-2016b', 'libGLU/9.0.0-intel-2017a',
> > 'libICE/1.0.9-foss-2016a', 'libSM/1.2.2-foss-2016a',
> > 'libX11/1.6.3-foss-2016a', 'libX11/1.6.3-foss-2016b',
> > 'libXau/1.0.8-foss-2016a', 'libXau/1.0.8-foss-2016b',
> > 'libXcursor/1.1.14-foss-2016a',
'libXdamage/1.1.4-foss-2016a',
> > 'libXdamage/1.1.4-foss-2016b', 'libXdmcp/1.1.2-foss-2016a',
> > 'libXdmcp/1.1.2-foss-2016b', 'libXext/1.3.3-foss-2016a',
> > 'libXext/1.3.3-foss-2016b', 'libXfixes/5.0.1-foss-2016a',
> > 'libXfixes/5.0.1-foss-2016b', 'libXfont/1.5.1-foss-2016a',
> > 'libXfont/1.5.1-foss-2016b', 'libXft/2.3.2-foss-2016a',
> > 'libXft/2.3.2-foss-2016b', 'libXi/1.7.6-foss-2016a',
> > 'libXinerama/1.1.3-foss-2016a', 'libXmu/1.1.2-foss-2016a',
> > 'libXpm/3.5.11-foss-2016a', 'libXrandr/1.5.0-foss-2016a',
> > 'libXrender/0.9.9-foss-2016a',
'libXrender/0.9.9-foss-2016b',
> > 'libXt/1.1.5-foss-2016a', 'libcerf/1.4-foss-2016a',
> > 'libcerf/1.4-foss-2016b', 'libcerf/1.5-foss-2016b',
> > 'libcerf/1.5-foss-2017a', 'libcerf/1.5-intel-2017a',
> > 'libdrm/2.4.67-foss-2016a', 'libdrm/2.4.67-foss-2016b',
> > 'libdrm/2.4.70-foss-2016b', 'libdrm/2.4.70-foss-2017a',
> > 'libdrm/2.4.76-intel-2017a', 'libffi/3.2.1-GCCcore-6.3.0',
> > 'libffi/3.2.1-foss-2016a', 'libffi/3.2.1-foss-2016b',
> > 'libffi/3.2.1-foss-2017a', 'libfontenc/1.1.3-foss-2016a',
> > 'libfontenc/1.1.3-foss-2016b', 'libgd/2.1.1-foss-2016a',
> > 'libgd/2.1.1-foss-2016b', 'libgd/2.2.3-foss-2016b',
> > 'libgd/2.2.3-foss-2017a', 'libgd/2.2.4-intel-2017a',
> > 'libjpeg-turbo/1.4.2-foss-2016a',
> > 'libjpeg-turbo/1.4.2-foss-2016a-NASM-2.12.01',
> > 'libjpeg-turbo/1.4.2-foss-2016b',
> > 'libjpeg-turbo/1.4.2-foss-2017a-NASM-2.12.01',
> > 'libjpeg-turbo/1.5.0-foss-2016b',
'libjpeg-turbo/1.5.0-foss-2017a',
> > 'libjpeg-turbo/1.5.1-intel-2017a',
> 'libjpeg-turbo/1.5.2-GCCcore-6.3.0',
> > 'libpciaccess/0.13.4-foss-2016a',
'libpciaccess/0.13.4-foss-2016b',
> > 'libpng/1.6.21-foss-2016a', 'libpng/1.6.21-foss-2016b',
> > 'libpng/1.6.21-foss-2017a', 'libpng/1.6.23-foss-2016b',
> > 'libpng/1.6.24-foss-2016b', 'libpng/1.6.24-foss-2017a',
> > 'libpng/1.6.24-intel-2017a', 'libpng/1.6.26-foss-2016b',
> > 'libpng/1.6.29-GCCcore-6.3.0',
'libpthread-stubs/0.3-foss-2016a',
> > 'libpthread-stubs/0.3-foss-2016b',
> 'libpthread-stubs/0.3-foss-2017a',
> > 'libreadline/6.3', 'libreadline/6.3-GCCcore-6.3.0',
> > 'libreadline/6.3-foss-2016a', 'libreadline/6.3-foss-2016b',
> > 'libreadline/6.3-foss-2017a',
'libreadline/6.3-intel-2017a',
> > 'libreadline/7.0-GCCcore-6.3.0', 'libtool/2.4.6',
> > 'libtool/2.4.6-GCCcore-6.3.0',
'libtool/2.4.6-GNU-4.9.3-2.25',
> > 'libtool/2.4.6-foss-2016a', 'libtool/2.4.6-foss-2016b',
> > 'libtool/2.4.6-foss-2017a', 'libtool/2.4.6-intel-2017a',
> > 'libunwind/1.1-foss-2016a', 'libunwind/1.1-foss-2016b',
> > 'libxcb/1.11.1-foss-2016a', 'libxcb/1.11.1-foss-2016b',
> > 'libxml2/2.9.3-foss-2016a', 'libxml2/2.9.3-foss-2016b',
> > 'libxml2/2.9.3-foss-2017a', 'libxml2/2.9.4-GCCcore-6.3.0',
> > 'libxml2/2.9.4-foss-2016b',
> 'libxml2/2.9.4-foss-2016b-Python-2.7.12',
> > 'libxml2/2.9.4-foss-2017a',
> 'libxml2/2.9.4-foss-2017a-Python-2.7.13',
> > 'libxml2/2.9.4-intel-2017a',
> 'libxml2/2.9.4-intel-2017a-Python-2.7.13',
> > 'likwid/4.0.1-GNU-4.9.3-2.25', 'lm-sensors/3.4.0',
'lmod/7.4.17',
> > 'makedepend/1.0.5-foss-2016a',
> > 'matplotlib/1.5.1-foss-2016a-Python-2.7.11',
> > 'matplotlib/1.5.1-foss-2016a-Python-2.7.11-freetype-2.6.3',
> > 'matplotlib/1.5.1-foss-2016a-Python-3.5.1',
> > 'matplotlib/1.5.3-foss-2016b-Python-2.7.12',
> 'nano/2.2.6-foss-2016b',
> > 'ncurses/5.9-GCC-4.9.2', 'ncurses/5.9-foss-2016b',
'ncurses/6.0',
> > 'ncurses/6.0-GCCcore-6.3.0', 'ncurses/6.0-foss-2016a',
> > 'ncurses/6.0-foss-2016b', 'ncurses/6.0-foss-2017a',
> > 'ncurses/6.0-intel-2017a', 'netCDF/4.4.1-foss-2016b',
> > 'nettle/3.2-foss-2016b', 'nettle/3.2-foss-2017a',
> > 'nettle/3.2-intel-2017a', 'nettle/3.3-intel-2017a',
> > 'networkx/1.11-foss-2016a-Python-2.7.11',
> > 'networkx/2.2-foss-2016b-Python-2.7.11',
'nodejs/4.4.7-foss-2016a',
> > 'nodejs/6.10.3-foss-2017a', 'ns/2.35-foss-2016b',
> > 'numactl/2.0.11-GCC-4.9.3-2.25',
'numactl/2.0.11-GCC-5.4.0-2.26',
> > 'numactl/2.0.11-GCC-6.3.0-2.27',
'numactl/2.0.11-foss-2016a',
> > 'numpy/1.11.0-foss-2016b-Python-2.7.11',
'otcl/1.14-foss-2016b',
> > 'pandas/0.18.0-foss-2016a-Python-3.5.1',
> > 'pip/8.1.2-foss-2016b-Python-2.7.12',
'pixman/0.34.0-GCCcore-6.3.0',
> > 'pixman/0.34.0-foss-2016a', 'pixman/0.34.0-foss-2016b',
> > 'pixman/0.34.0-foss-2017a', 'pkg-config/0.29-foss-2016a',
> > 'pkg-config/0.29-foss-2016b',
'pkg-config/0.29.1-GCCcore-6.3.0',
> > 'pkg-config/0.29.1-foss-2016b',
'pkg-config/0.29.1-foss-2017a',
> > 'pkg-config/0.29.1-intel-2017a',
'pkg-config/0.29.2-intel-2017a',
> > 'protobuf-python/3.2.0-foss-2016b-Python-2.7.12',
> > 'protobuf/3.2.0-foss-2016b', 'protobuf/3.3.0-foss-2017a',
> > 'qrupdate/1.1.2-foss-2016a', 'qrupdate/1.1.2-foss-2016b',
> > 'qrupdate/1.1.2-intel-2017a',
'randrproto/1.5.0-foss-2016a',
> > 'renderproto/0.11-foss-2016a',
'renderproto/0.11-foss-2016b',
> > 'requests/2.10.0-foss-2016a-Python-2.7.11',
> > 'scikit-learn/0.17.1-foss-2016a-Python-2.7.11',
> > 'scikit-learn/0.17.1-foss-2016a-Python-3.5.1',
> > 'scikit-learn/0.18.1-foss-2016b-Python-2.7.12',
'settarg/7.4.17',
> > 'stress/1.0.4-foss-2016b',
'supermagic/20170824-foss-2016a',
> > 'supermagic/20170824-foss-2017a', 'tclcl/1.20-foss-2016b',
> > 'testpath/0.3-foss-2016a-Python-3.5.1',
> 'util-linux/2.29.2-intel-2017a',
> > 'util-linux/2.30.1-GCCcore-6.3.0',
'x264/20160614-foss-2016b',
> > 'xcb-proto/1.11', 'xextproto/7.3.0-foss-2016a',
> > 'xextproto/7.3.0-foss-2016b', 'xextproto/7.3.0-foss-2017a',
> > 'xineramaproto/1.2.1-foss-2016a',
'xorg-macros/1.19.0-foss-2016a',
> > 'xorg-macros/1.19.0-foss-2016b',
'xorg-macros/1.19.0-foss-2017a',
> > 'xprop/1.2.2-foss-2016a', 'xprop/1.2.2-foss-2016b',
> > 'xprop/1.2.2-foss-2017a', 'xprop/1.2.2-intel-2017a',
> > 'xproto/7.0.28-foss-2016a', 'xproto/7.0.28-foss-2016b',
> > 'xproto/7.0.28-foss-2017a', 'xtrans/1.3.5-foss-2016a',
> > 'xtrans/1.3.5-foss-2016b', 'xtrans/1.3.5-foss-2017a',
'zlib/1.2.11',
> > 'zlib/1.2.11-GCCcore-6.3.0', 'zlib/1.2.11-foss-2016a',
> > 'zlib/1.2.11-foss-2016b', 'zlib/1.2.7-foss-2016b',
'zlib/1.2.8',
> > 'zlib/1.2.8-GCC-4.9.3-binutils-2.25',
'zlib/1.2.8-GCC-5.4.0-2.26',
> > 'zlib/1.2.8-GCCcore-4.9.3', 'zlib/1.2.8-GCCcore-5.4.0',
> > 'zlib/1.2.8-GCCcore-6.3.0', 'zlib/1.2.8-foss-2016a',
> > 'zlib/1.2.8-foss-2016b', 'zlib/1.2.8-foss-2017a',
> 'zlib/1.2.8-intel-2017a']
> > == 2019-03-11 00:40:53,148 easyconfig.py:608 DEBUG
Dependencies
> BEFORE
> > filtering: [{'external_module_metadata': {},
'full_mod_name':
> > 'flex/2.6.3', 'toolchain': {'version': '', 'name':
'dummy'}, 'name':
> > 'flex', 'dummy': True, 'short_mod_name': 'flex/2.6.3',
> > 'external_module': False, 'versionsuffix': '', 'version':
'2.6.3',
> > 'toolchain_inherited': True, 'hidden': False,
'build_only': True},
> > {'external_module_metadata': {}, 'full_mod_name':
'Bison/3.0.4',
> > 'toolchain': {'version': '', 'name': 'dummy'}, 'name':
'Bison',
> 'dummy':
> > True, 'short_mod_name': 'Bison/3.0.4', 'external_module':
False,
> > 'versionsuffix': '', 'version': '3.0.4',
'toolchain_inherited':
> True,
> > 'hidden': False, 'build_only': True},
> {'external_module_metadata': {},
> > 'full_mod_name': 'zlib/1.2.11', 'toolchain': {'version':
'', 'name':
> > 'dummy'}, 'name': 'zlib', 'dummy': True, 'short_mod_name':
> > 'zlib/1.2.11', 'external_module': False,
'versionsuffix': '',
> 'version':
> > '1.2.11', 'toolchain_inherited': True, 'hidden': False,
> 'build_only': True}]
> > == 2019-03-11 00:40:53,175 build_log.py:158 ERROR EasyBuild
> crashed with
> > an error (at
> >
>
easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/lib/python2.7/site-packages/vsc_base-2.5.8-py2.7.egg/vsc/utils/exceptions.py:124
>
> > in __init__): Module is already loaded (EBROOTBINUTILS is
set),
> > installation cannot continue. (at
> >
>
easybuild/centos/7.3.1611/Broadwell/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_framework-3.5.0-py2.7.egg/easybuild/framework/easyblock.py:1522
>
> > in check_readiness_step)
> > == 2019-03-11 00:40:53,175 easyblock.py:2685 WARNING build
failed
> (first
> > 300 chars): Module is already loaded (EBROOTBINUTILS is
set),
> > installation cannot continue.
> > == 2019-03-11 00:40:53,175 easyblock.py:279 INFO Closing
log for
> > application name binutils version 2.28
> >
> > Please do help us.
> >
> > With Regards
> >
> > Sona
> >
> >
>
