Dear Loris,
What if you change the dummy toolchain version to '' , e.g.:
toolchain = {'name': 'dummy', 'version': ''}
See https://github.com/easybuilders/easybuild-framework/issues/2318
and
https://easybuild.readthedocs.io/en/latest/Concepts_and_Terminology.html?#dummy-toolchain
Kind regards,
Valentin
On 2019-04-09 16:21, Loris Bennett wrote:
Loris Bennett <[email protected]> writes:
Hi,
I want to write an easyconfig for SPM
https://www.fil.ion.ucl.ac.uk/spm/software/spm12/
which is a GPL toolbox for MATLAB. It comprises a bunch of MATLAB
files, both in the top-level directory and in various subdirectories. In
addition there is a 'src' subdirectory, which contains some C files and
a makefile, whose install step just copies the binaries to the top-level
and to some other subdirectories.
Which easyblock might be most appropriate for this scenario? I looked
at 'MakeCp', but this has 'files_to_copy' as a mandatory parameter. As
I want to copy everything, this made me think that there might be an
more suitable easyblock.
Any thoughts?
I have
easyblock = 'MakeCp'
name = 'SPM'
version = '12'
homepage = 'https://www.fil.ion.ucl.ac.uk/spm/'
description = """Statistical Parametric Mapping refers to the construction
and assessment of
spatially extended statistical processes used to test hypotheses about
functional imaging data. These ideas have been instantiated in software that
is
called SPM."""
toolchain = {'name': 'dummy', 'version': 'dummy'}
source_urls =
['http://www.fil.ion.ucl.ac.uk/spm/download/restricted/eldorado']
sources = ['%(namelower)s%(version_major)s.zip']
checksums =
['02bb2def8a091c9c1ceaea0194fb1014e9b435a937a0efa618d9bef15a9c53b4']
dependencies = [('MATLAB', '2018b')]
start_dir = 'src'
files_to_copy = ['*']
sanity_check_paths = {
'files': ["spm_add.m", "spm_zeros.m"],
'dirs': ["toolbox", "tpm"]
}
moduleclass = 'bio'
modextravars = { 'MATLABPATH': '.',
'PATH': 'bin',
}
but the build is failing with
mex -O -largeArrayDims -c spm_vol_utils.c -DSPM_UNSIGNED_CHAR
make: mex: Command not found
There is no indication in the log file of MATLAB being loaded, so I
guess I'm doing some thing wrong and just specifying MATLAB as a
dependency is not enough.
Does anyone have an idea?
Cheers,
Loris
--
Valentin Plugaru | [email protected]
Parallel Computing and Optimization Group
CSC Research Unit, University of Luxembourg
PGP KeyID 0x3F3242C5B34D98C2
