Dear Valentin, Thanks for the hint. Changing the toolchain version to '' gave me
Building with 'gcc'. Warning: You are using gcc version '4.8.5-36)'. The version of gcc is not supported. The version currently supported with MEX is '6.3.x'. For a list of currently supported compilers see: https://www.mathworks.com/support/compilers/current_release. so I added builddependencies = [('GCCcore', '6.3.0')] GCC 6.3.x being the supported version for my MATLAB version. I still get an error: make: *** [utils_uchar.mexa64.o] Error 255 make: *** Waiting for unfinished jobs.... mv -f spm_vol_utils.o utils_int_s.mexa64.o Building with 'gcc'. MEX completed successfully. mv -f spm_vol_utils.o utils_schar.mexa64.o Building with 'gcc'. MEX completed successfully. Building with 'gcc'. The command '/trinity/shared/easybuild/software/GCCcore/6.3.0/bin/gcc' exited with a return value '0' Building with 'gcc'. MEX completed successfully. mv -f spm_vol_utils.o utils_float.mexa64.o mv -f spm_vol_utils.o utils_ushort.mexa64.o Building with 'gcc'. The command '/trinity/shared/easybuild/software/GCCcore/6.3.0/bin/gcc' exited with a return value '0' make: *** [utils_double_s.mexa64.o] Error 255 Building with 'gcc'. The command '/trinity/shared/easybuild/software/GCCcore/6.3.0/bin/gcc' exited with a return value '0' mv -f spm_vol_utils.o utils_ushort_s.mexa64.o Building with 'gcc'. The command '/trinity/shared/easybuild/software/GCCcore/6.3.0/bin/gcc' exited with a return value '0' mv: cannot stat ‘spm_vol_utils.o’: No such file or directory This seems however not to be Easybuild-related. Cheers, Loris Valentin Plugaru <[email protected]> writes: > Dear Loris, > > What if you change the dummy toolchain version to '' , e.g.: > > toolchain = {'name': 'dummy', 'version': ''} > > See https://github.com/easybuilders/easybuild-framework/issues/2318 > and > https://easybuild.readthedocs.io/en/latest/Concepts_and_Terminology.html?#dummy-toolchain > > Kind regards, > Valentin > > On 2019-04-09 16:21, Loris Bennett wrote: >> Loris Bennett <[email protected]> writes: >> >>> Hi, >>> >>> I want to write an easyconfig for SPM >>> >>> https://www.fil.ion.ucl.ac.uk/spm/software/spm12/ >>> >>> which is a GPL toolbox for MATLAB. It comprises a bunch of MATLAB >>> files, both in the top-level directory and in various subdirectories. In >>> addition there is a 'src' subdirectory, which contains some C files and >>> a makefile, whose install step just copies the binaries to the top-level >>> and to some other subdirectories. >>> >>> Which easyblock might be most appropriate for this scenario? I looked >>> at 'MakeCp', but this has 'files_to_copy' as a mandatory parameter. As >>> I want to copy everything, this made me think that there might be an >>> more suitable easyblock. >>> >>> Any thoughts? >> I have >> >> easyblock = 'MakeCp' >> >> name = 'SPM' >> version = '12' >> >> homepage = 'https://www.fil.ion.ucl.ac.uk/spm/' >> description = """Statistical Parametric Mapping refers to the >> construction and assessment of >> spatially extended statistical processes used to test hypotheses about >> functional imaging data. These ideas have been instantiated in software >> that is >> called SPM.""" >> >> toolchain = {'name': 'dummy', 'version': 'dummy'} >> >> source_urls = >> ['http://www.fil.ion.ucl.ac.uk/spm/download/restricted/eldorado'] >> sources = ['%(namelower)s%(version_major)s.zip'] >> checksums = >> ['02bb2def8a091c9c1ceaea0194fb1014e9b435a937a0efa618d9bef15a9c53b4'] >> >> dependencies = [('MATLAB', '2018b')] >> >> start_dir = 'src' >> >> files_to_copy = ['*'] >> >> sanity_check_paths = { >> 'files': ["spm_add.m", "spm_zeros.m"], >> 'dirs': ["toolbox", "tpm"] >> } >> >> moduleclass = 'bio' >> >> modextravars = { 'MATLABPATH': '.', >> 'PATH': 'bin', >> } >> >> but the build is failing with >> >> mex -O -largeArrayDims -c spm_vol_utils.c -DSPM_UNSIGNED_CHAR >> make: mex: Command not found >> >> There is no indication in the log file of MATLAB being loaded, so I >> guess I'm doing some thing wrong and just specifying MATLAB as a >> dependency is not enough. >> >> Does anyone have an idea? >> >> Cheers, >> >> Loris >> -- Dr. Loris Bennett (Mr.) ZEDAT, Freie Universität Berlin Email [email protected]
