R-3.5.1-foss-2018.eb was refreshed adding some extensions, including the `shinythemes` that Bioconductor is lacking. I ran into this just last week.
https://github.com/easybuilders/easybuild-easyconfigs/pull/7420 You should be able to address this by an `eb --force --skip` to install the missing extensions. This is apparently something that happens occasionally judging by the list of pull requests in the easyconfigs repo. The PR for Bioconductor/3.7 now mentions that it depends on the refreshed R/3.5.1 PR. // Lars ________________________________________ From: [email protected] <[email protected]> on behalf of Loris Bennett <[email protected]> Sent: Tuesday, May 14, 2019 16:58 To: easybuild Subject: [easybuild] Installation of R/3.5.1-foss-2018b successful but incomplete Hi, I just tried to do eb R-bundle-Bioconductor-3.7-foss-2018b-R-3.5.1.eb --robot This failed on the last of 134 packages with ERROR: dependency ‘shinythemes’ is not available for package ‘GSVA’ The package 'shinythemes' is one which should be installed by R-3.5.1-foss-2018b.eb but as it turns out, of the 668 packages which should be installed, only 648 in fact are. If some of the packages had failed to install, I would have expected the whole thing to fail and the module file not to be generated, but in fact it was. Am I missing something here? How could I debug the issue? Cheers, Loris -- Dr. Loris Bennett (Mr.) ZEDAT, Freie Universität Berlin Email [email protected]
