Hi Terja, Thanks, this did the trick.
Cheers, Loris Terje Kvernes <[email protected]> writes: > Hi all, > > Loris, to test this, you can download the updated easyblock from > https://raw.githubusercontent.com/easybuilders/easybuild-easyblocks/de9f76f02681aacec9543e14f7fd6e2edcec8683/easybuild/easyblocks/s/siesta.py > and use --include-easyblock with the downloaded file on the command line along > the lines of: > > eb Siesta-4.1-b4-foss-2018b.eb --include-easyblock siesta.py > > > >> On 19 Feb 2020, at 16:42, Maik Schmidt <[email protected]> wrote: >> >> Hi Loris, >> >> just yesterday, I opened an issue concerning the very same problem, see: >> >> https://github.com/easybuilders/easybuild-easyblocks/issues/1965 >> https://github.com/easybuilders/easybuild-easyblocks/pull/1967 >> >> This adds the NetCDF-4 support. No MPI-IO and METIS ordering support yet, >> though. Maybe this should be added to the easyblock, too. >> >> Best, >> Maik >> >> Am 19.02.20 um 16:29 schrieb Loris Bennett: >>> Hi, >>> >>> I'm having difficulty getting tbtrans from Siesta to use NetCDF 4. >>> Apparently, when tbtrans is run it should print out >>> >>> PARALLEL version >>> NetCDF support >>> NetCDF-4 support >>> NetCDF-4 MPI-IO support >>> METIS ordering support >>> >>> but I just get >>> >>> PARALLEL version >>> NetCDF support >>> >>> The script to build the version of netCDF which comes with Siesta >>> implies that the following flags need to be set >>> >>> FPPFLAGS += -DCDF -DNCDF -DNCDF_4 >>> >>> Thus I changed the following line in the Siesta easyblock from >>> >>> (r"^(FPPFLAGS\s*=.*)$", r"\1 -DCDF $(NETCDF_INCLUDE)"), >>> >>> to >>> >>> (r"^(FPPFLAGS\s*=.*)$", r"\1 -DCDF -DNCDF -DNCDF_4 >>> $(NETCDF_INCLUDE) "), >>> >>> but I still don't get >>> >>> NetCDF-4 support >>> >>> The Siesta documentation also mentions setting >>> >>> COMP_LIBS += libncdf.a libfdict.a >>> >>> in order to compile against the Siesta version of NetCDF. This seems to >>> conflict with >>> >>> libnetcdff.a >>> >>> which is the static library provided by the EC for netCDF-Fortran. >>> >>> Any ideas? >>> >>> Cheers, >>> >>> Loris >>> >> >> -- >> Maik Schmidt >> HPC Services >> >> Technische Universität Dresden >> Zentrum für Informationsdienste und Hochleistungsrechnen (ZIH) >> Andreas-Pfitzmann-Bau E049 >> D-01187 Dresden >> Telefon: +49 351 463-32836 -- Dr. Loris Bennett (Mr.) ZEDAT, Freie Universität Berlin Email [email protected]
