Dear Ricardo,
On 27/04/2020 16:20, Ricardo Gregorio wrote:
Hi all,
Currently trying to build BiG-SCAPE, thank you Kenneth!
One of the dependencies is Biopython-1.75-intel-2019b-Python-3.7.4, which fails
during sanity check with the following error:
...
sphinx 2.2.0 requires sphinxcontrib-applehelp, which is not installed.
sphinx 2.2.0 requires sphinxcontrib-devhelp, which is not installed.
sphinx 2.2.0 requires sphinxcontrib-htmlhelp, which is not installed.
sphinx 2.2.0 requires sphinxcontrib-js
Is it anything related to: Python-3.7.4-GCCcore-8.3.0
https://github.com/easybuilders/easybuild-easyconfigs/pull/9329/files
We are running are running easybuild: 4.2.0
Yes, you should add the missing extensions to your Python 3.7.4
installation:
eb Python-3.7.4-GCCcore-8.3.0.eb --skip --force
The --skip instructs EasyBuild to only install the missing extensions.
Even though you're using --force, the existing installation will be left
untouched (because of --skip), only what's missing will be added.
regards,
Kenneth
Core:64
Intel Xeon Gold 6130
CentOS 7.5
Regards,
Ricardo
-----Original Message-----
From: Kenneth Hoste <kenneth.ho...@ugent.be>
Sent: 20 April 2020 12:59
To: Ricardo Gregorio <ricardo.grego...@rothamsted.ac.uk>
Cc: easybuild@lists.ugent.be
Subject: Re: [easybuild] BiG-SCAPE EB installation
Dear Ricardo,
On 11/11/2019 14:27, ricardo.grego...@rothamsted.ac.uk wrote:
Hi all,
Couple of users requested installation of BiG-SCAPE (Biosynthetic
Gene Similarity Clustering and Prospecting Engine).
https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgit.
wageningenur.nl%2Fmedema-group%2FBiG-SCAPE%2Ftree%2Fmaster&data=01
%7C01%7Cricardo.gregorio%40rothamsted.ac.uk%7Cb1e4b54b94ac450dd57d08d7
e5223102%7Cb688362589414342b0e37b8cc8392f64%7C1&sdata=a0Ma%2BC7Fd6
BHwb8Rq5UwfFMr%2BhK4SjlVbhtCEFCIxcY%3D&reserved=0
I could not find BiG-SCAPE modules on eb. Has anyone built or come
across BiG- SCAPE?
We recently merged a pull request adding an easyconfig file for BiG-SCAPE, see
https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Feasybuilders%2Feasybuild-easyconfigs%2Fpull%2F10352&data=01%7C01%7Cricardo.gregorio%40rothamsted.ac.uk%7Cb1e4b54b94ac450dd57d08d7e5223102%7Cb688362589414342b0e37b8cc8392f64%7C1&sdata=8hzNz3BVySA6R3zwiNAcrbY65k7q%2Br8fASwNLNL2Olc%3D&reserved=0
.
It's included in the latest EasyBuild release.
regards,
Kenneth
Thanks in advance,
rg
Rothamsted Research is a company limited by guarantee, registered in England at
Harpenden, Hertfordshire, AL5 2JQ under the registration number 2393175 and a
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