Problem solved!!! Thanks for the prompt assistance once again Kenneth!!!!
Regards, Ricardo -----Original Message----- From: Kenneth Hoste <kenneth.ho...@ugent.be> Sent: 27 April 2020 15:47 To: Ricardo Gregorio <ricardo.grego...@rothamsted.ac.uk> Cc: easybuild@lists.ugent.be Subject: Re: [easybuild] BiG-SCAPE EB installation Dear Ricardo, On 27/04/2020 16:20, Ricardo Gregorio wrote: > Hi all, > > Currently trying to build BiG-SCAPE, thank you Kenneth! > > One of the dependencies is Biopython-1.75-intel-2019b-Python-3.7.4, which > fails during sanity check with the following error: > ... > sphinx 2.2.0 requires sphinxcontrib-applehelp, which is not installed. > sphinx 2.2.0 requires sphinxcontrib-devhelp, which is not installed. > sphinx 2.2.0 requires sphinxcontrib-htmlhelp, which is not installed. > sphinx 2.2.0 requires sphinxcontrib-js > > Is it anything related to: Python-3.7.4-GCCcore-8.3.0 > https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgith > ub.com%2Feasybuilders%2Feasybuild-easyconfigs%2Fpull%2F9329%2Ffiles&am > p;data=01%7C01%7Cricardo.gregorio%40rothamsted.ac.uk%7C6811a50a6999456 > 540e108d7eab9e406%7Cb688362589414342b0e37b8cc8392f64%7C1&sdata=r0w > MzS0fUAQGbhkBjBPUYesUppy1bWdjTLnDx4QOeC8%3D&reserved=0 > > We are running are running easybuild: 4.2.0 Yes, you should add the missing extensions to your Python 3.7.4 installation: eb Python-3.7.4-GCCcore-8.3.0.eb --skip --force The --skip instructs EasyBuild to only install the missing extensions. Even though you're using --force, the existing installation will be left untouched (because of --skip), only what's missing will be added. regards, Kenneth > > Core:64 > Intel Xeon Gold 6130 > CentOS 7.5 > > Regards, > Ricardo > > -----Original Message----- > From: Kenneth Hoste <kenneth.ho...@ugent.be> > Sent: 20 April 2020 12:59 > To: Ricardo Gregorio <ricardo.grego...@rothamsted.ac.uk> > Cc: easybuild@lists.ugent.be > Subject: Re: [easybuild] BiG-SCAPE EB installation > > Dear Ricardo, > > On 11/11/2019 14:27, ricardo.grego...@rothamsted.ac.uk wrote: >> Hi all, >> >> Couple of users requested installation of BiG-SCAPE (Biosynthetic >> Gene Similarity Clustering and Prospecting Engine). >> https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgit. >> wageningenur.nl%2Fmedema-group%2FBiG-SCAPE%2Ftree%2Fmaster&data=01 >> %7C01%7Cricardo.gregorio%40rothamsted.ac.uk%7Cb1e4b54b94ac450dd57d08d7 >> e5223102%7Cb688362589414342b0e37b8cc8392f64%7C1&sdata=a0Ma%2BC7Fd6 >> BHwb8Rq5UwfFMr%2BhK4SjlVbhtCEFCIxcY%3D&reserved=0 >> >> I could not find BiG-SCAPE modules on eb. Has anyone built or come >> across BiG- SCAPE? > We recently merged a pull request adding an easyconfig file for BiG-SCAPE, see > https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Feasybuilders%2Feasybuild-easyconfigs%2Fpull%2F10352&data=01%7C01%7Cricardo.gregorio%40rothamsted.ac.uk%7C6811a50a6999456540e108d7eab9e406%7Cb688362589414342b0e37b8cc8392f64%7C1&sdata=fPBkARtDMVwZhIETaUlTrfgbwXVn%2Fyt8OAdiFzj8Ozk%3D&reserved=0 > . > > It's included in the latest EasyBuild release. > > > regards, > > Kenneth >> Thanks in advance, >> rg > > Rothamsted Research is a company limited by guarantee, registered in England > at Harpenden, Hertfordshire, AL5 2JQ under the registration number 2393175 > and a not for profit charity number 802038. Rothamsted Research is a company limited by guarantee, registered in England at Harpenden, Hertfordshire, AL5 2JQ under the registration number 2393175 and a not for profit charity number 802038.
