Hi Wolfram,
Without a better workaround, I can think of a dirty cheat. You can change the
name of the module it expects to find such that it will always pass that
particular check, e.g., add this to your easyconfig (untested)
options = {'modulename': 'os',}
Can you open an issue in the easyblock repo so we keep track of this limitation?
Thanks,
Alan
On Fri, 4 Sep 2020 at 12:15, Wolfram Zieger
<[email protected]<mailto:[email protected]>> wrote:
Hello,
silly question maybe, but I'm really stuck here:
Building an .eb recipe for a PyPi package called "cellxgene" (which by the way
isn't a good idea at all, because dependency versions hell of this pypi-package
- but that's another thing).
Looking a t the documentation, there seems nothing, this Python package
provides to "import", as it is a standalone Python program (as I understand it).
So "import cellxgene" fails (which happens during easybuilding at the end of a
huge dependency chain) and there is no other modulename I could provide.
Now I can build this either as easyblock = 'PythonPackage' (with
exts_defaultclass = 'PythonPackage') or as easyblock = 'PythonBundle' - but
because the final sanity check will either way be "import cellxgene" it only
works with "skipsteps = ['sanitycheck']" which I really really dislike
(providing "sanity_check_commands" does not override the "import" test).
Question: Is there a way to only skip the "import test" for that final
PythonPackage only (after all other dependencies do complete with that check),
or give it a dummy modulename or something like that? So I can keep a
sanity-check in?
Or shouldn't I use "PythonPackage" at all for a standalone Python program even
when available from PyPi?
Thanks and best regards from Berlin,
Wolfram
--
Wolfram Zieger
--------------
Senior Systems Engineer
IT Services Berlin
Phone: +49 30 2007 697 -12
alt. Phone: +49 160 58 28 208
Fax: +49 30 2007 697 -11
[email protected]<mailto:[email protected]>
science+computing ag/ATOS
Geschäftsstelle Berlin
Am Studio 16
12489 Berlin, Germany
https://de.atos.net/sc
science + computing
an A T O S company
--
Dr. Alan O'Cais
E-CAM Software Manager
Juelich Supercomputing Centre
Forschungszentrum Juelich GmbH
52425 Juelich, Germany
Phone: +49 2461 61 5213
Fax: +49 2461 61 6656
E-mail: [email protected]<mailto:[email protected]>
WWW: http://www.fz-juelich.de/ias/jsc/EN
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