Dear Loris, It looks like you just need to add bzip2 as a dependency. If that works please make sure to open a PR to update the upstream easyconfigs for this requirement.
Thanks, Alan On Mon, 8 Feb 2021 at 13:17, Loris Bennett <[email protected]<mailto:[email protected]>> wrote: Hi, When I try to build ncbi-vdb-2.10.7-gompi-2020a.eb it fails with the error: gcc -c -Wno-array-bounds -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/trinity/shared/easybuild/build/n cbivdb/2.10.7/gompi-2020a/ncbi-vdb-2.10.7/libs/klib/judy -I/trinity/shared/easybuild/build/ncbivdb/2.10.7/gompi-2020a/ncbi-vdb-2.10.7/libs/klib/judy/.. -MD -o JudyIns.w.64.pic.o -fPIC -O2 -ftree-vectorize -march=native -fno-math-errno -Wn o-variadic-macros -fno-strict-aliasing -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -fstack-protector -Wa,--noexecstack -Wall -Wno-array-bounds -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64 -D_A RCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/trinity/shared/easybuild/build/ncbivdb/2.10.7/gompi-2020a/ncbi-vdb-2.10.7/libs/klib/judy -I/trinity/shared/easybuild/build/ncbivdb/2.10.7/gompi-2020a/ncbi-vdb-2.10. 7/libs/klib/judy/.. -DJUDYL /trinity/shared/easybuild/build/ncbivdb/2.10.7/gompi-2020a/ncbi-vdb-2.10.7/libs/klib/judy/JudyIns.c /trinity/shared/easybuild/software/binutils/2.34-GCCcore-9.3.0/bin/ld.gold: error: cannot find -lbz2 bzip2 is not one of the dependencies, but nbci-vdb itself seems to includes a version. Any ideas? Cheers, Loris -- Dr. Loris Bennett (Hr./Mr.) ZEDAT, Freie Universität Berlin Email [email protected]<mailto:[email protected]> -- Dr. Alan O'Cais E-CAM Software Manager Juelich Supercomputing Centre Forschungszentrum Juelich GmbH 52425 Juelich, Germany Phone: +49 2461 61 5213 Fax: +49 2461 61 6656 E-mail: [email protected]<mailto:[email protected]> WWW: http://www.fz-juelich.de/ias/jsc/EN ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------ Forschungszentrum Juelich GmbH 52425 Juelich Sitz der Gesellschaft: Juelich Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 Vorsitzender des Aufsichtsrats: MinDir Volker Rieke Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender), Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt ------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------
