On 08/02/2021 14:11, Loris Bennett wrote:
Dear Alan,
Adding the dependency worked - update PR created.
Fixed in
https://github.com/easybuilders/easybuild-easyconfigs/pull/12120, thanks
for the PR Loris!
Cheers,
Loris
Alan O'Cais <[email protected]> writes:
Dear Loris,
It looks like you just need to add bzip2 as a dependency. If that works please
make sure to open a PR to update the upstream easyconfigs for this requirement.
Thanks,
Alan
On Mon, 8 Feb 2021 at 13:17, Loris Bennett <[email protected]> wrote:
Hi,
When I try to build
ncbi-vdb-2.10.7-gompi-2020a.eb
it fails with the error:
gcc -c -Wno-array-bounds -DNDEBUG -m64 -DLINUX -DUNIX -D_GNU_SOURCE
-D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64
-D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib
-DSHLIBEXT=so -I/trinity/shared/easybuild/build/n
cbivdb/2.10.7/gompi-2020a/ncbi-vdb-2.10.7/libs/klib/judy
-I/trinity/shared/easybuild/build/ncbivdb/2.10.7/gompi-2020a/ncbi-vdb-2.10.7/libs/klib/judy/..
-MD
-o JudyIns.w.64.pic.o -fPIC -O2 -ftree-vectorize -march=native
-fno-math-errno -Wn o-variadic-macros -fno-strict-aliasing
-U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 -fstack-protector
-Wa,--noexecstack -Wall -Wno-array-bounds -DNDEBUG -m64 -DLINUX -DUNIX
-D_GNU_SOURCE -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=linux64
-D_A RCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib
-DSHLIBEXT=so
-I/trinity/shared/easybuild/build/ncbivdb/2.10.7/gompi-2020a/ncbi-vdb-2.10.7/libs/klib/judy
-I/trinity/shared/easybuild/build/ncbivdb/2.10.7/gompi-2020a/ncbi-vdb-2.10.
7/libs/klib/judy/.. -DJUDYL
/trinity/shared/easybuild/build/ncbivdb/2.10.7/gompi-2020a/ncbi-vdb-2.10.7/libs/klib/judy/JudyIns.c
/trinity/shared/easybuild/software/binutils/2.34-GCCcore-9.3.0/bin/ld.gold:
error: cannot find -lbz2
bzip2 is not one of the dependencies, but nbci-vdb itself seems to
includes a version.
Any ideas?
Cheers,
Loris
--
Dr. Loris Bennett (Hr./Mr.)
ZEDAT, Freie Universität Berlin Email [email protected]
