If you look at this website, you might also want to check out the 
link to 'politics'  provided by the (currently unemployed) author of 
the program (I deleted that information from the original post) - 
David Inouye, list owner and moderator.

A new unpaid TREEFINDER version is online at  www.treefinder.de . The 
program computes phylogenetic trees from molecular sequences.

New features are:

- parametric bootstrapping from a dialog
- simulation of partitioned sequences
- sequence simulation along reports
- mtArt protein model
- various other improvements

Testing of phylogenetic hypotheses and substitution models is very easy
now. One can examine the stochastic variation of all parameters under a
particular null model and compute all kinds of statistics.

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