Hi Folks: I am work on a data set to compare the genetic diversity of an invasive plant in its native and introduced range. One issue is to assess whether our sampling effort is sufficient to cover the genetic diversity. I hope to do some analysis on the detected diversity as a function of sample size. Idealistically something similar to the figure below (but I hope to use some diversity index instead of the genotype). I am looking for software that can run bootstrap (or similar simulation) for such analysis. Can anyone recommend some program?
Thank you very much. Stephen Xu Fig. 3. (Lavergne and Molofsky PNAS 2007) The number of multilocus genotypes (G) of reed canarygrass detected in central and peripheral regions of its invasive range (Vermont and North Carolina, respectively) and native range (Czech Republic and France, respectively), as a function of sample size. Dot-dash lines represent 95% confidence limits obtained by randomly generating 50,000 replicates of G for every sample size. This permutation procedure was used to assess the robustness of regional patterns of genotypic diversity to unevenness in sample size.
