I managed to get hold of a debug file from the failing dbxfasta. The edited highlights are:
Debug file dbxfasta.dbg buffered:No ajFileNewIn '/usr/local/share/EMBOSS/acd/dbxfasta.acd' EOF ajFileGetsL file /usr/local/share/EMBOSS/acd/dbxfasta.acd closing file '/usr/local/share/EMBOSS/acd/dbxfasta.acd' ajUserGet buffer len: 0 res: 2048 ptr: 8d8eb18 ajUserGet buffer len: 0 res: 2048 ptr: 8d8eb18 ajUserGet buffer len: 5 res: 2048 ptr: 8d8f320 ajUserGet buffer len: 1 res: 2048 ptr: 8d8fb28 ajUserGet buffer len: 5 res: 2048 ptr: 8d8eb18 ajUserGet buffer len: 3 res: 2048 ptr: 8d8eb18 ajUserGet buffer len: 8 res: 2048 ptr: 8d8eb18 ajFileScan directory: './' nisc-platypus-shotgun-1071756042.fasta nisc-platypus-shotgun-1080815515.fasta nisc-platypus-shotgun-1102160893.fasta [snip big list of files] closing file './/traces_oanatinus.ent' ajFileNewIn './nisc-platypus-shotgun-1048960391.fasta' EOF ajFileGetsL file ./nisc-platypus-shotgun-1048960391.fasta closing file './nisc-platypus-shotgun-1048960391.fasta' ajFileNewIn './nisc-platypus-shotgun-1071756042.fasta' EOF ajFileGetsL file ./nisc-platypus-shotgun-1071756042.fasta closing file './nisc-platypus-shotgun-1071756042.fasta' ajFileNewIn './nisc-platypus-shotgun-1080815515.fasta' EOF ajFileGetsL file ./nisc-platypus-shotgun-1080815515.fasta closing file './nisc-platypus-shotgun-1080815515.fasta' ajFileNewIn './nisc-platypus-shotgun-1102160893.fasta' EOF ajFileGetsL file ./nisc-platypus-shotgun-1102160893.fasta closing file './nisc-platypus-shotgun-1102160893.fasta' ajFileNewIn './nisc-platypus-shotgun-1104879084.fasta' EOF ajFileGetsL file ./nisc-platypus-shotgun-1104879084.fasta closing file './nisc-platypus-shotgun-1104879084.fasta' ajFileNewIn './nisc-platypus-shotgun-1109000445.fasta' EOF ajFileGetsL file ./nisc-platypus-shotgun-1109000445.fasta closing file './nisc-platypus-shotgun-1109000445.fasta' ajFileNewIn './nisc-platypus-shotgun-1110804272.fasta' EOF ajFileGetsL file ./nisc-platypus-shotgun-1110804272.fasta closing file './nisc-platypus-shotgun-1110804272.fasta' ajFileNewIn './nisc-platypus-shotgun-1116844699.fasta' EOF ajFileGetsL file ./nisc-platypus-shotgun-1116844699.fasta closing file './nisc-platypus-shotgun-1116844699.fasta' ajFileNewIn './nisc-platypus-shotgun-1142973027.fasta' EOF ajFileGetsL file ./nisc-platypus-shotgun-1142973027.fasta closing file './nisc-platypus-shotgun-1142973027.fasta' ajFileNewIn './wugsc-ornithorhynchus_anatinus-cloneEnd-1113828608.fasta' WriteBucket: Overflow WriteBucket: Overflow ReadBucket: Overflow ReadBucket: Overflow ReadBucket: Overflow ReadBucket: Overflow WriteBucket: Overflow [Loads more of these] GetKeys: Overflow ReadBucket: Overflow GetKeys: Overflow WriteNode: Overflow GetKeys: Overflow WriteNode: Overflow WriteBucket: Overflow WriteBucket: Overflow [Loads of these] WriteNode: Overflow GetKeys: Overflow WriteNode: Overflow GetKeys: Overflow GetKeys: Overflow WriteNode: Overflow GetKeys: Overflow GetKeys: Overflow WriteNode: Overflow GetKeys: Overflow WriteNode: Overflow GetKeys: Overflow [Killed at this point as the .dbg file getting enormous] _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
