Hi Simon, The overflow code isn't fully implemented yet and it shouldn't need to use it if your resource definition is OK. You'll get overflows if the length values are too short for the ID/ACC/SV/etc. Take a look and get back to me off-list if adjusting any appropriate length resource definitions doesn't help.
HTH Alan > I managed to get hold of a debug file from the failing dbxfasta. The > edited highlights are: > > Debug file dbxfasta.dbg buffered:No > ajFileNewIn '/usr/local/share/EMBOSS/acd/dbxfasta.acd' > EOF ajFileGetsL file /usr/local/share/EMBOSS/acd/dbxfasta.acd > closing file '/usr/local/share/EMBOSS/acd/dbxfasta.acd' > ajUserGet buffer len: 0 res: 2048 ptr: 8d8eb18 > ajUserGet buffer len: 0 res: 2048 ptr: 8d8eb18 > ajUserGet buffer len: 5 res: 2048 ptr: 8d8f320 > ajUserGet buffer len: 1 res: 2048 ptr: 8d8fb28 > ajUserGet buffer len: 5 res: 2048 ptr: 8d8eb18 > ajUserGet buffer len: 3 res: 2048 ptr: 8d8eb18 > ajUserGet buffer len: 8 res: 2048 ptr: 8d8eb18 > ajFileScan directory: './' > nisc-platypus-shotgun-1071756042.fasta > nisc-platypus-shotgun-1080815515.fasta > nisc-platypus-shotgun-1102160893.fasta > > > [snip big list of files] > > closing file './/traces_oanatinus.ent' > ajFileNewIn './nisc-platypus-shotgun-1048960391.fasta' > EOF ajFileGetsL file ./nisc-platypus-shotgun-1048960391.fasta > closing file './nisc-platypus-shotgun-1048960391.fasta' > ajFileNewIn './nisc-platypus-shotgun-1071756042.fasta' > EOF ajFileGetsL file ./nisc-platypus-shotgun-1071756042.fasta > closing file './nisc-platypus-shotgun-1071756042.fasta' > ajFileNewIn './nisc-platypus-shotgun-1080815515.fasta' > EOF ajFileGetsL file ./nisc-platypus-shotgun-1080815515.fasta > closing file './nisc-platypus-shotgun-1080815515.fasta' > ajFileNewIn './nisc-platypus-shotgun-1102160893.fasta' > EOF ajFileGetsL file ./nisc-platypus-shotgun-1102160893.fasta > closing file './nisc-platypus-shotgun-1102160893.fasta' > ajFileNewIn './nisc-platypus-shotgun-1104879084.fasta' > EOF ajFileGetsL file ./nisc-platypus-shotgun-1104879084.fasta > closing file './nisc-platypus-shotgun-1104879084.fasta' > ajFileNewIn './nisc-platypus-shotgun-1109000445.fasta' > EOF ajFileGetsL file ./nisc-platypus-shotgun-1109000445.fasta > closing file './nisc-platypus-shotgun-1109000445.fasta' > ajFileNewIn './nisc-platypus-shotgun-1110804272.fasta' > EOF ajFileGetsL file ./nisc-platypus-shotgun-1110804272.fasta > closing file './nisc-platypus-shotgun-1110804272.fasta' > ajFileNewIn './nisc-platypus-shotgun-1116844699.fasta' > EOF ajFileGetsL file ./nisc-platypus-shotgun-1116844699.fasta > closing file './nisc-platypus-shotgun-1116844699.fasta' > ajFileNewIn './nisc-platypus-shotgun-1142973027.fasta' > EOF ajFileGetsL file ./nisc-platypus-shotgun-1142973027.fasta > closing file './nisc-platypus-shotgun-1142973027.fasta' > ajFileNewIn './wugsc-ornithorhynchus_anatinus-cloneEnd-1113828608.fasta' > WriteBucket: Overflow > WriteBucket: Overflow > ReadBucket: Overflow > ReadBucket: Overflow > ReadBucket: Overflow > ReadBucket: Overflow > WriteBucket: Overflow > > [Loads more of these] > > GetKeys: Overflow > ReadBucket: Overflow > GetKeys: Overflow > WriteNode: Overflow > GetKeys: Overflow > WriteNode: Overflow > WriteBucket: Overflow > WriteBucket: Overflow > > [Loads of these] > > WriteNode: Overflow > GetKeys: Overflow > WriteNode: Overflow > GetKeys: Overflow > GetKeys: Overflow > WriteNode: Overflow > GetKeys: Overflow > GetKeys: Overflow > WriteNode: Overflow > GetKeys: Overflow > WriteNode: Overflow > GetKeys: Overflow > > [Killed at this point as the .dbg file getting enormous] > > _______________________________________________ > EMBOSS mailing list > [email protected] > http://lists.open-bio.org/mailman/listinfo/emboss > _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
