Hi, you can use 'showfeat' with the option '-pos' to display sequence features with the positions.
If your exons are annotated as 'mRNA' in the feature table you could use: showfeat -pos -matchtype mRNA <your_sequence_file> To get only the positions without the ascii graphics use '-width 0' HTH, David. [EMAIL PROTECTED] schrieb am 29/08/2006 13:37:46: > Hi! > > Is there a program in EMBOSS to extract the coordinates of exons? > > Shrish > > > ______________________________________________________________________ > Dr. Shrish Tiwari, Scientist > BIC, Centre for Cellular and Molecular Biology > Uppal Road, Hyderabad - 500 007 > Phone: 91-40-7192776 (work), 91-40-7156603 (home) > email: [EMAIL PROTECTED] > ______________________________________________________________________ > > _______________________________________________ > EMBOSS mailing list > [email protected] > http://lists.open-bio.org/mailman/listinfo/emboss _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
