On 29 Aug 2006, at 12:37, Shrish Tiwari wrote: > Hi! > > Is there a program in EMBOSS to extract the coordinates of exons?
It depends what you mean. If you want to extract the transcript sequence from a genomic sequence with an mRNA feature defined in its header then you can use coderet. If you want to figure out where the exon positions are in a sequence and you have an mRNA and a genomic sequence then you can use est2genome. If you just want to view the header annotation then entret will give you that. Simon. _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
