Hi, I think I have unearthed an issue with fuzzpro/fuzznuz and EMBOSS 4.0.0 The old version in 3.0.0 had a '-mismatch' option. This has changed in version 4.0.0 to '-pmismatch'.
The 'mismatch' integer element seems to have been removed from the fuzzpro/nuc ACD files. I'm not sure how/when Jemboss parses the ACD flies, but it doesn't seem to be allowing for the new '-pmismatch' option, and users are unable to specify a value. any ideas ? cheers Neil -- Neil Brookes Bioinformatics Cancer Research UK + 44 (0)207 2693063 _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
