Hi Neil Thanks for your message. This is a known bug. As far as I understand the new pattern qualifier has associated qualifiers -pmismatch (also pformat and pname) which Jemboss does not know about (yet) as it just treats the pattern as a string.
Cheers Tim On 13/9/06 11:19, "Neil Brookes" <[EMAIL PROTECTED]> wrote: > Hi, > > I think I have unearthed an issue with fuzzpro/fuzznuz and EMBOSS 4.0.0 > The old version in 3.0.0 had a '-mismatch' option. This has changed in > version 4.0.0 to '-pmismatch'. > > The 'mismatch' integer element seems to have been removed from the > fuzzpro/nuc ACD files. > I'm not sure how/when Jemboss parses the ACD flies, but it doesn't seem > to be allowing for the new '-pmismatch' option, and users are unable to > specify a value. > > any ideas ? > > cheers > Neil _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
