Hi Shrish, Shrish Tiwari wrote: > Hi! > I used the following command to extract only positions of CDS from gbk files: > showfeat -pos -matchtype CDS -width 0 > But I noticed that the program does not extract positions of CDS that lie on > the complementary strand, e.g. CDS complement(5683..6459) did not > show up in the resultant file. Any ideas on how I can get showfeat to extract > these positions too.
It worked for me, but reports these as 5683..6469 (without -width 0 it will show the arrow in the reverse direction) Can you try running entret on the same genbank entry, and sending the output file to [EMAIL PROTECTED] so we can take a look at it. regards, Peter Rice _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
