Hm, if the genome is annotated, you could use maskfeat -type mRNA (or -type CDS) to mask all transcribed or translated regions with N.
HTH, David. [EMAIL PROTECTED] schrieb am 31/10/2006 13:41:19: > Hi! > Is there a way of extracting the noncoding regions of a genome using > an EMBOSS program? > Shrish > Dr. Shrish Tiwari > E503, Centre for Cellular and Molecular Biology > Uppal Road, Hyderabad - 500 007, INDIA > Phone: 91-40-27192777 > Alternate email: [EMAIL PROTECTED] > > _______________________________________________ > EMBOSS mailing list > [email protected] > http://lists.open-bio.org/mailman/listinfo/emboss _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
