I use BioPerl as well. Extraction of non-coding regions and features like intron, UTR etc. would certainly be useful from within EMBOSS. Suraj Mukatira
-----Original Message----- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of Ryan Golhar Sent: Tuesday, October 31, 2006 11:03 AM To: 'Peter Rice'; 'Shrish Tiwari' Cc: [email protected] Subject: Re: [EMBOSS] extracting noncoding regions I think that would be a useful feature...I have a need for it now and currently use a Bioperl script to parse out noncoding regions from a GenBank entry... > -----Original Message----- > From: [EMAIL PROTECTED] > [mailto:[EMAIL PROTECTED] On Behalf Of Peter Rice > Sent: Tuesday, October 31, 2006 10:34 AM > To: Shrish Tiwari > Cc: [email protected] > Subject: Re: [EMBOSS] extracting noncoding regions > > > Hi Shrish, > > Shrish Tiwari wrote: > > Hi! > > Is there a way of extracting the noncoding regions of a > genome using > > an EMBOSS program? > > That is a simple change to coderet to return non-coding > sequence (exclude the > CDS and mRNA features). > > Does anyone else want this? We can do it for the next release. > > regards, > > Peter > _______________________________________________ > EMBOSS mailing list > [email protected] > http://lists.open-> bio.org/mailman/listinfo/emboss > _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
