michael watson (IAH-C) wrote: > I want to translate very large (eukrayotic chromosomes!) DNA sequences > in all 6 frames. Transeq takes about a day per large chromosome, > running on a linux machine with 3Gb of RAM. > > Any suggestions on alternatives or how I could speed it up?
You want just a 6-frame translation of an entire chromosome? I will look into why it takes so long. We have made some changes to string size extension that may already help this for the next release. regards, Peter _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
