Hi Peter Yes, a 6-frame translation of a chromosome :) It was meant to be part of a quick-and-dirty analysis method, but is proving to be anything but quick....
Mick -----Original Message----- From: Peter Rice [mailto:[EMAIL PROTECTED] Sent: 27 November 2006 15:15 To: michael watson (IAH-C) Cc: [email protected] Subject: Re: [EMBOSS] Transeq and very large sequences michael watson (IAH-C) wrote: > I want to translate very large (eukrayotic chromosomes!) DNA sequences > in all 6 frames. Transeq takes about a day per large chromosome, > running on a linux machine with 3Gb of RAM. > > Any suggestions on alternatives or how I could speed it up? You want just a 6-frame translation of an entire chromosome? I will look into why it takes so long. We have made some changes to string size extension that may already help this for the next release. regards, Peter _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
