Hi Jean, It is more like a feature. PS50888 is a matrix and patmatmotifs doesn't deal with that type of PROSITE entry - it just compares the pattern string entries.
Alan > Hi, > > I used 'swissprot:hair_drome' as input sequence and run 'matpatmotifs' in > EMBOSS and got 0 hits. However, when I used the same input sequnce on > interproscan, the result > (http://www.ebi.ac.uk/cgi-bin/iprscan/iprscan?tool=iprscan&jobid=iprscan-200 > 70118-14025926) show that it contains basic Helix-loop-helix motif which > is > ID PS50888 in prosite database. Is this a bug or did I do something wrong? > I > also run the same sequence against the 'motifs' program in GCG package. > Again no hit was found. > > Thank you. > > Jean Mao > _______________________________________________ > EMBOSS mailing list > [email protected] > http://lists.open-bio.org/mailman/listinfo/emboss > _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
