Hi Jean, this is an old problem with patmatmotifs. This program makes use only of the traditonal Prosite patterns and unfortunately can not handle the newer type Prosite matrix entries.
Cheers, David. [EMAIL PROTECTED] schrieb am 18/01/2007 15:14:20: > Hi, > > I used 'swissprot:hair_drome' as input sequence and run 'matpatmotifs' in > EMBOSS and got 0 hits. However, when I used the same input sequnce on > interproscan, the result > (http://www.ebi.ac.uk/cgi-bin/iprscan/iprscan?tool=iprscan&jobid=iprscan-200 > 70118-14025926) show that it contains basic Helix-loop-helix motif which is > ID PS50888 in prosite database. Is this a bug or did I do something wrong? I > also run the same sequence against the 'motifs' program in GCG package. > Again no hit was found. > > Thank you. > > Jean Mao > _______________________________________________ > EMBOSS mailing list > [email protected] > http://lists.open-bio.org/mailman/listinfo/emboss _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
