Thanks. I didn't see this in the list of options in EMBOSS-Explorer. Luke, perhaps this can be added as an option to the interface?
Ryan > > -----Original Message----- > > From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] > > Sent: Friday, January 26, 2007 1:47 AM > > To: [EMAIL PROTECTED] > > Cc: [email protected]; [EMAIL PROTECTED] > > Subject: Antwort: [EMBOSS] request for a useful addition > > > > > > This can be done with the option -sreverse1 or -sreverse2 to > > use the reverse complement of the firts or second sequence > > used as input for e.g. dottup. It is a standard option > > available to all emboss programs. You can get a list of those > > options with -help -verbose. > > > > David. > > > > [EMAIL PROTECTED] schrieb am 25/01/2007 18:31:22: > > > > > The program dottup (and other dotplot tools) takes the > two sequence > > given > > > and displays a dotplot. It would be useful if you could > give it the > > option > > > to reverse complement one of the sequences then perform a dotplot. > > > > > > I was comparing a mRNA with a genomic sequence and wasn't > > seeing the > > > similarity between the sequences. Then I releazied I needed to > > > rev-comp > > the > > > mRNA and it showed up fine. Of course, one can do this > > using revseq, > > but to > > > have dottup do it for you would be even better. > > > > > > Ryan > > > > > > > > > _______________________________________________ > > > EMBOSS mailing list > > > [email protected] > > > http://lists.open-bio.org/mailman/listinfo/emboss > > > > > > _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
