Weizhong Li wrote: > Does anybody know how to use seqret to fetch fasta sequences from the > index database by dbxfasta?
You need a database definition. Seqret will use this to find the new index files and retrieve entries. Define a database that points to your dbxfasta index and data files (in your ~/.embossrc file or in the global emboss.defaults.file) DB mydata [ type: "N" format: "fasta" method: "emboss" dir: "/data/path/in/full" indexdir: "/index/path/in/full" comment: "DBXFASTA index of embl" # if you used a different name when you indexed the database: dbalias: embl ] Then seqret mydata:x12345 will retrieve entry x12345 in FASTA format. regards, Peter _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
