Dear EMBOSSERs,
I am trying my hand at an EMBOSS program and would like to read in a
list of sequences from a FASTA file and make pairwise comparisons
between each sequence. If I startwith a AjPSeqall object
AjPSeqall seqs=NULL;
seqs = ajAcdGetSeqall ("seqs");
I have seen
AjPSeq seq;
while(ajSeqallNext(seqs, &seq)) {
}
in the documentation, but I would like to do something like a double for
loop to get all pairwise comparisons. What is the best way of doing
this? I have been searching in the online docs but did not yet find
anything.
By the way, in http://emboss.sourceforge.net/developers/program.html
*17.2 Getting information from a sequence*
*ajSeqGetName* get the name. This is a pointer to the internal AjPStr
*ajSeqName* get the name. This is a pointer to the internal char*
these datatypes are flagged as obsolete by the compiler, so the document
may need revision here?
Thanks,
Peter Robinson
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