Hi all, I have checked the docs and googled around but I did not find an explanation for how the shortest_similarity or shortest_identity is calculated by needle (using the -nobrief option).
For longest_identity it seems to be: (Identical residues x 100)/(Length of Alignment - Total Number of Gaps in Alignment) Thanks and regards, Marc _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
